Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJQW4_RS06040 Genome accession   NZ_CP178606
Coordinates   1296163..1296738 (+) Length   191 a.a.
NCBI ID   WP_241625407.1    Uniprot ID   -
Organism   Acinetobacter sp. A7.4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1291163..1301738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJQW4_RS06015 (ACJQW4_06015) - 1291280..1292086 (-) 807 WP_241625419.1 SDR family NAD(P)-dependent oxidoreductase -
  ACJQW4_RS06020 (ACJQW4_06020) - 1292180..1292551 (-) 372 WP_241625416.1 MerR family transcriptional regulator -
  ACJQW4_RS06025 (ACJQW4_06025) tenA 1292622..1293296 (-) 675 WP_241625414.1 thiaminase II -
  ACJQW4_RS06030 (ACJQW4_06030) - 1293511..1294596 (+) 1086 WP_241625412.1 DUF475 domain-containing protein -
  ACJQW4_RS06035 (ACJQW4_06035) - 1294747..1296111 (+) 1365 WP_241625410.1 MFS transporter -
  ACJQW4_RS06040 (ACJQW4_06040) ssb 1296163..1296738 (+) 576 WP_241625407.1 single-stranded DNA-binding protein Machinery gene
  ACJQW4_RS06045 (ACJQW4_06045) - 1297256..1298698 (+) 1443 WP_241625405.1 amino acid permease -
  ACJQW4_RS06050 (ACJQW4_06050) - 1298769..1300268 (-) 1500 WP_241625656.1 PLP-dependent aminotransferase family protein -
  ACJQW4_RS06055 (ACJQW4_06055) gabT 1300424..1301722 (+) 1299 WP_241625404.1 4-aminobutyrate--2-oxoglutarate transaminase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20868.60 Da        Isoelectric Point: 6.4820

>NTDB_id=1090400 ACJQW4_RS06040 WP_241625407.1 1296163..1296738(+) (ssb) [Acinetobacter sp. A7.4]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDSWTDKSTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEGVPAGDNAGFNQPRFNNNQNSGYGNNTGYNNAGGFNNNQGGGNQ
AGYGNNNPSGFAPKAAPAAPAPADLDDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1090400 ACJQW4_RS06040 WP_241625407.1 1296163..1296738(+) (ssb) [Acinetobacter sp. A7.4]
ATGCGTGGTGTAAATAAGGTTATTTTAGTTGGAACTTTAGGTCGTGATCCTGAAACGAAAACTTTTCCAAATGGGGGCTC
GCTTACTCAGTTTTCAATCGCAACCAGCGATTCTTGGACTGACAAAAGCACAGGTGAACGTAAAGAACAAACGGAATGGC
ACCGCATTGTCTTGCACAATCGTTTAGGTGAAATTGCACAGCAATATTTACGTAAAGGTTCTAAAGTTTATATTGAAGGT
TCATTGCGTACTCGCCAATGGACAGACCAGAATGGACAAGAGCGTTACACCACTGAAATCCGTGGTGAGCAAATGCAAAT
GCTCGATTCTAACCGCCAACAAGGCGAAGGTGTTCCAGCAGGCGATAATGCTGGTTTTAACCAACCGCGTTTTAACAATA
ACCAGAACAGTGGTTATGGCAATAACACTGGTTATAACAACGCAGGCGGTTTTAACAATAATCAAGGCGGTGGCAACCAA
GCGGGTTATGGCAACAATAATCCAAGTGGCTTTGCACCAAAAGCAGCGCCAGCAGCACCTGCACCCGCTGATTTAGATGA
TGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.832

100

0.518
  ssb Vibrio cholerae strain A1552

56.061

69.11

0.387

Multiple sequence alignment