Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABFT42_RS17900 Genome accession   NZ_CP178596
Coordinates   3450045..3450734 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus mojavensis strain C3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3445045..3455734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS17865 (ABFT42_17865) flgN 3445225..3445707 (-) 483 WP_413286612.1 flagellar protein FlgN -
  ABFT42_RS17870 (ABFT42_17870) flgM 3445723..3445989 (-) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFT42_RS17875 (ABFT42_17875) - 3446070..3446489 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  ABFT42_RS17880 (ABFT42_17880) comFC 3446563..3447252 (-) 690 WP_413287409.1 phosphoribosyltransferase family protein Machinery gene
  ABFT42_RS17885 (ABFT42_17885) - 3447249..3447545 (-) 297 WP_010332068.1 late competence development ComFB family protein -
  ABFT42_RS17890 (ABFT42_17890) comFA 3447602..3448996 (-) 1395 WP_413286613.1 ATP-dependent helicase ComFA Machinery gene
  ABFT42_RS17895 (ABFT42_17895) - 3449103..3449948 (-) 846 WP_268447046.1 DegV family protein -
  ABFT42_RS17900 (ABFT42_17900) degU 3450045..3450734 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFT42_RS17905 (ABFT42_17905) degS 3450817..3451974 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  ABFT42_RS17910 (ABFT42_17910) - 3452191..3452844 (+) 654 WP_413286614.1 YigZ family protein -
  ABFT42_RS17915 (ABFT42_17915) - 3452844..3454010 (+) 1167 WP_010332074.1 LCP family protein -
  ABFT42_RS17920 (ABFT42_17920) - 3454085..3455161 (-) 1077 WP_010332075.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1090343 ABFT42_RS17900 WP_003219701.1 3450045..3450734(-) (degU) [Bacillus mojavensis strain C3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090343 ABFT42_RS17900 WP_003219701.1 3450045..3450734(-) (degU) [Bacillus mojavensis strain C3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTGAAGCGGATATTGGATTTCGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCGATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGGGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTGATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ACCTCGTAAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAGGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment