Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABFT42_RS17890 Genome accession   NZ_CP178596
Coordinates   3447602..3448996 (-) Length   464 a.a.
NCBI ID   WP_413286613.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3442602..3453996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS17855 (ABFT42_17855) flgL 3442777..3443673 (-) 897 WP_413286610.1 flagellar hook-associated protein FlgL -
  ABFT42_RS17860 (ABFT42_17860) flgK 3443683..3445206 (-) 1524 WP_413286611.1 flagellar hook-associated protein FlgK -
  ABFT42_RS17865 (ABFT42_17865) flgN 3445225..3445707 (-) 483 WP_413286612.1 flagellar protein FlgN -
  ABFT42_RS17870 (ABFT42_17870) flgM 3445723..3445989 (-) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFT42_RS17875 (ABFT42_17875) - 3446070..3446489 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  ABFT42_RS17880 (ABFT42_17880) comFC 3446563..3447252 (-) 690 WP_413287409.1 phosphoribosyltransferase family protein Machinery gene
  ABFT42_RS17885 (ABFT42_17885) - 3447249..3447545 (-) 297 WP_010332068.1 late competence development ComFB family protein -
  ABFT42_RS17890 (ABFT42_17890) comFA 3447602..3448996 (-) 1395 WP_413286613.1 ATP-dependent helicase ComFA Machinery gene
  ABFT42_RS17895 (ABFT42_17895) - 3449103..3449948 (-) 846 WP_268447046.1 DegV family protein -
  ABFT42_RS17900 (ABFT42_17900) degU 3450045..3450734 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFT42_RS17905 (ABFT42_17905) degS 3450817..3451974 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator
  ABFT42_RS17910 (ABFT42_17910) - 3452191..3452844 (+) 654 WP_413286614.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52944.98 Da        Isoelectric Point: 9.9537

>NTDB_id=1090342 ABFT42_RS17890 WP_413286613.1 3447602..3448996(-) (comFA) [Bacillus mojavensis strain C3]
MQTKTSESNSLFSKELQQQLQSRHLLRTEISFSDEIIDWHTEHGYISAEESLSKNKRGYRCNRCGQNDQQYFSSYHSFGK
DKVYCRSCVMMGRVSEDVSLYSWSKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQDELLIWAVCGAGKTELLFPG
IELALNLKQRVCIATPRTDVVLELAPRLKAAFRGADISALYGGSDDKGRLSPLIISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELRRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLIRNKIPNAVK
RWIEQHVKEGRPVFLFVPSISILEKAASCFKNMNYRTASVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1090342 ABFT42_RS17890 WP_413286613.1 3447602..3448996(-) (comFA) [Bacillus mojavensis strain C3]
ATGCAGACTAAGACATCAGAATCGAACAGTCTATTCTCTAAAGAACTGCAGCAGCAGCTCCAGAGCCGTCATCTGCTTAG
AACAGAAATCTCATTTTCTGACGAGATCATTGATTGGCATACTGAGCATGGTTATATATCTGCCGAGGAGTCATTATCAA
AAAATAAACGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCATCGTATCATTCATTTGGAAAA
GATAAGGTTTACTGCCGCTCTTGTGTCATGATGGGCAGGGTGAGTGAGGATGTTTCTTTGTATTCTTGGAGTAAGGAGGC
GGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGATGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATTGGCATTAAATCTAAAACAGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
GCTGAAGGCTGCATTTCGAGGTGCTGATATTTCAGCTTTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TAATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACCCTTCAATTCGCTGTCCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGTGCCAC
ACCTCCTAAAGAATTAAGAAGAAAAACGTATAAAGGTGAGTTGAAGTCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CGTTGCCTGAACCGCGCTTTCAATGGTGCGGAAACTGGAAAAAGAAATTAATCCGAAATAAGATCCCAAATGCGGTAAAA
AGATGGATAGAGCAGCATGTAAAAGAAGGAAGGCCCGTTTTTTTATTTGTTCCTTCCATTTCTATACTGGAAAAGGCTGC
TTCTTGTTTTAAAAATATGAATTATCGAACAGCGTCTGTACATGCGGAAGACAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTAGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGCCGGCATAAAGAACA
TGCAGACGGTGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATAGAGGCAAGAAAACATATCAAAATAATGA
ATGAATTGGCTTTGAAAAATAAGTTGATAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(121-269)

Helicase conserved C-terminal domain (Helicase_C)

(323-424)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.498

98.707

0.834

Multiple sequence alignment