Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABFT42_RS17880 Genome accession   NZ_CP178596
Coordinates   3446563..3447252 (-) Length   229 a.a.
NCBI ID   WP_413287409.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3441563..3452252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS17845 (ABFT42_17845) fliW 3441703..3442134 (-) 432 WP_010332060.1 flagellar assembly protein FliW -
  ABFT42_RS17850 (ABFT42_17850) - 3442155..3442730 (-) 576 WP_413286609.1 DUF6470 family protein -
  ABFT42_RS17855 (ABFT42_17855) flgL 3442777..3443673 (-) 897 WP_413286610.1 flagellar hook-associated protein FlgL -
  ABFT42_RS17860 (ABFT42_17860) flgK 3443683..3445206 (-) 1524 WP_413286611.1 flagellar hook-associated protein FlgK -
  ABFT42_RS17865 (ABFT42_17865) flgN 3445225..3445707 (-) 483 WP_413286612.1 flagellar protein FlgN -
  ABFT42_RS17870 (ABFT42_17870) flgM 3445723..3445989 (-) 267 WP_185848558.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABFT42_RS17875 (ABFT42_17875) - 3446070..3446489 (-) 420 WP_198098075.1 TIGR03826 family flagellar region protein -
  ABFT42_RS17880 (ABFT42_17880) comFC 3446563..3447252 (-) 690 WP_413287409.1 phosphoribosyltransferase family protein Machinery gene
  ABFT42_RS17885 (ABFT42_17885) - 3447249..3447545 (-) 297 WP_010332068.1 late competence development ComFB family protein -
  ABFT42_RS17890 (ABFT42_17890) comFA 3447602..3448996 (-) 1395 WP_413286613.1 ATP-dependent helicase ComFA Machinery gene
  ABFT42_RS17895 (ABFT42_17895) - 3449103..3449948 (-) 846 WP_268447046.1 DegV family protein -
  ABFT42_RS17900 (ABFT42_17900) degU 3450045..3450734 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABFT42_RS17905 (ABFT42_17905) degS 3450817..3451974 (-) 1158 WP_010332072.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25980.99 Da        Isoelectric Point: 7.9290

>NTDB_id=1090341 ABFT42_RS17880 WP_413287409.1 3446563..3447252(-) (comFC) [Bacillus mojavensis strain C3]
MICLLCDSQFSQAVSWCSLFLLQPDDRVCQSCRNKLQIIKGAICPLCGRPQTVHEVCADCEAWKSRIDDGLRLSQNRSVY
LYNDMMKETLARMKFRGDAEIISAFKNDFSSEFSAVYPDKRLVLVPIPLSEERKAERGFNQSQMLAECLNRPILNPLIRL
NNEKQSKKKKTERLLSEHVFETKNSSVEGMDIVLIDDLYTTGATLHYAARCLLEQGKAGSVSSFTLVRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1090341 ABFT42_RS17880 WP_413287409.1 3446563..3447252(-) (comFC) [Bacillus mojavensis strain C3]
CTGATCTGTCTATTGTGCGATTCACAATTTTCTCAAGCTGTTTCATGGTGCTCACTATTTTTATTACAACCTGACGATAG
GGTCTGCCAGTCCTGCAGAAATAAATTACAGATCATCAAAGGGGCCATCTGTCCGCTTTGCGGAAGACCTCAAACCGTTC
ATGAAGTGTGTGCGGATTGTGAGGCATGGAAATCAAGAATAGATGACGGCTTAAGGCTCAGCCAGAACCGTTCTGTTTAC
TTATATAATGACATGATGAAAGAAACGCTTGCCCGTATGAAATTTAGGGGAGATGCAGAGATAATAAGCGCTTTTAAAAA
TGACTTTTCCTCTGAATTCTCTGCTGTCTATCCAGATAAACGCCTTGTGCTCGTTCCCATTCCGTTAAGTGAAGAACGGA
AAGCAGAACGCGGCTTTAACCAGTCACAAATGCTTGCTGAATGCTTAAACCGGCCCATCCTCAATCCTCTCATCCGCCTG
AACAATGAAAAGCAGTCTAAGAAAAAGAAAACGGAACGCCTGCTTTCAGAGCATGTTTTTGAAACAAAAAACAGCTCGGT
TGAGGGTATGGATATCGTTTTAATCGACGATCTTTATACCACAGGCGCCACTTTACACTATGCTGCCCGCTGTTTATTGG
AGCAAGGCAAAGCTGGTTCAGTGTCATCTTTTACCTTAGTGAGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(3-60)

Phosphoribosyl transferase domain (Pribosyltran)

(176-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

76.419

100

0.764

Multiple sequence alignment