Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ABFT42_RS15965 Genome accession   NZ_CP178596
Coordinates   3059468..3060112 (-) Length   214 a.a.
NCBI ID   WP_010331690.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3054468..3065112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS15930 (ABFT42_15930) - 3055661..3056092 (+) 432 WP_024122673.1 Na(+)/H(+) antiporter subunit B -
  ABFT42_RS15935 (ABFT42_15935) - 3056092..3056433 (+) 342 WP_010331684.1 Na(+)/H(+) antiporter subunit C -
  ABFT42_RS15940 (ABFT42_15940) - 3056426..3057907 (+) 1482 WP_268447274.1 Na+/H+ antiporter subunit D -
  ABFT42_RS15945 (ABFT42_15945) - 3057913..3058389 (+) 477 WP_413286515.1 Na+/H+ antiporter subunit E -
  ABFT42_RS15950 (ABFT42_15950) - 3058389..3058673 (+) 285 WP_326203655.1 Na(+)/H(+) antiporter subunit F1 -
  ABFT42_RS15955 (ABFT42_15955) mnhG 3058657..3059031 (+) 375 WP_010331688.1 monovalent cation/H(+) antiporter subunit G -
  ABFT42_RS15960 (ABFT42_15960) - 3059070..3059450 (-) 381 WP_106022011.1 hotdog fold thioesterase -
  ABFT42_RS15965 (ABFT42_15965) comA 3059468..3060112 (-) 645 WP_010331690.1 two-component system response regulator ComA Regulator
  ABFT42_RS15970 (ABFT42_15970) comP 3060193..3062493 (-) 2301 WP_268471514.1 histidine kinase Regulator
  ABFT42_RS15975 (ABFT42_15975) comX 3062505..3062669 (-) 165 WP_268471515.1 competence pheromone ComX -
  ABFT42_RS15980 (ABFT42_15980) - 3062682..3063542 (-) 861 WP_268471516.1 polyprenyl synthetase family protein -
  ABFT42_RS15985 (ABFT42_15985) degQ 3063727..3063867 (-) 141 WP_010331694.1 degradation enzyme regulation protein DegQ Regulator
  ABFT42_RS15990 (ABFT42_15990) - 3064328..3064696 (+) 369 WP_010331695.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24142.49 Da        Isoelectric Point: 4.6801

>NTDB_id=1090336 ABFT42_RS15965 WP_010331690.1 3059468..3060112(-) (comA) [Bacillus mojavensis strain C3]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIRQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1090336 ABFT42_RS15965 WP_010331690.1 3059468..3060112(-) (comA) [Bacillus mojavensis strain C3]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACGCCAGCATGATTTCTCATCATATGATCTCATTTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991

Multiple sequence alignment