Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ABFT42_RS02185 Genome accession   NZ_CP178596
Coordinates   428607..429557 (+) Length   316 a.a.
NCBI ID   WP_413286913.1    Uniprot ID   -
Organism   Bacillus mojavensis strain C3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423607..434557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT42_RS02160 (ABFT42_02160) rapC 425034..426182 (+) 1149 WP_168746930.1 response regulator aspartate phosphatase RapC Regulator
  ABFT42_RS02165 (ABFT42_02165) phrC 426166..426288 (+) 123 WP_010333023.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  ABFT42_RS02170 (ABFT42_02170) - 426393..426485 (-) 93 WP_026014660.1 YjcZ family sporulation protein -
  ABFT42_RS02175 (ABFT42_02175) - 426633..426737 (-) 105 WP_268444540.1 sporulation protein YjcZ -
  ABFT42_RS02180 (ABFT42_02180) - 426857..428221 (-) 1365 WP_010333024.1 aspartate kinase -
  ABFT42_RS02185 (ABFT42_02185) ceuB 428607..429557 (+) 951 WP_413286913.1 petrobactin ABC transporter permease YclN Machinery gene
  ABFT42_RS02190 (ABFT42_02190) yclO 429550..430497 (+) 948 WP_010333026.1 petrobactin ABC transporter permease YclO -
  ABFT42_RS02195 (ABFT42_02195) yclP 430491..431249 (+) 759 WP_229149899.1 petrobactin ABC transporter ATP-binding protein YclP -
  ABFT42_RS02200 (ABFT42_02200) - 431271..432224 (+) 954 WP_268444293.1 siderophore ABC transporter substrate-binding protein -
  ABFT42_RS02205 (ABFT42_02205) - 432274..433692 (-) 1419 WP_413286914.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35039.46 Da        Isoelectric Point: 9.8372

>NTDB_id=1090285 ABFT42_RS02185 WP_413286913.1 428607..429557(+) (ceuB) [Bacillus mojavensis strain C3]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLIAFVFALVGNFLFMRILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1090285 ABFT42_RS02185 WP_413286913.1 428607..429557(+) (ceuB) [Bacillus mojavensis strain C3]
ATGAAGCTACGTTACTTATTTTTTCTACTTATCATACTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATCTAAGCAAAGAAGAGGCATCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTTTAA
TCGCAGGGATGAGCATGAGCATCTGCGGCCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGCACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCATTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGTAATTTTCTGTTTATGAGAATTCTTGAAAGAATTAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACTTGATC
CAAAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTCTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTATCCCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATTTACAGAGGAGACAACCTAAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCTTATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538

Multiple sequence alignment