Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACJGE3_RS09600 Genome accession   NZ_CP178562
Coordinates   1996427..1997071 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain JT-3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1991427..2002071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJGE3_RS09565 (ACJGE3_09565) - 1992612..1993043 (+) 432 WP_077722765.1 Na(+)/H(+) antiporter subunit B -
  ACJGE3_RS09570 (ACJGE3_09570) - 1993043..1993384 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  ACJGE3_RS09575 (ACJGE3_09575) - 1993377..1994858 (+) 1482 WP_369614388.1 Na+/H+ antiporter subunit D -
  ACJGE3_RS09580 (ACJGE3_09580) - 1994864..1995340 (+) 477 WP_071392239.1 Na+/H+ antiporter subunit E -
  ACJGE3_RS09585 (ACJGE3_09585) - 1995340..1995624 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  ACJGE3_RS09590 (ACJGE3_09590) mnhG 1995608..1995982 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  ACJGE3_RS09595 (ACJGE3_09595) - 1996022..1996405 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  ACJGE3_RS09600 (ACJGE3_09600) comA 1996427..1997071 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  ACJGE3_RS09605 (ACJGE3_09605) comP 1997152..1999434 (-) 2283 WP_413353722.1 histidine kinase Regulator
  ACJGE3_RS09610 (ACJGE3_09610) comX 1999448..1999621 (-) 174 WP_102422026.1 competence pheromone ComX -
  ACJGE3_RS09615 (ACJGE3_09615) - 1999590..2000450 (-) 861 WP_180997900.1 polyprenyl synthetase family protein -
  ACJGE3_RS09620 (ACJGE3_09620) degQ 2000658..2000798 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  ACJGE3_RS09625 (ACJGE3_09625) - 2001263..2001604 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=1090174 ACJGE3_RS09600 WP_003152052.1 1996427..1997071(-) (comA) [Bacillus velezensis strain JT-3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1090174 ACJGE3_RS09600 WP_003152052.1 1996427..1997071(-) (comA) [Bacillus velezensis strain JT-3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGCTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCTGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGTACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment