Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACKUFS_RS27200 | Genome accession | NZ_CP178532 |
| Coordinates | 6041410..6042282 (-) | Length | 290 a.a. |
| NCBI ID | WP_007251658.1 | Uniprot ID | A0A8T8BXS7 |
| Organism | Pseudomonas cannabina strain YM7930 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 6034456..6048744 | 6041410..6042282 | within | 0 |
Gene organization within MGE regions
Location: 6034456..6048744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACKUFS_RS27180 (ACKUFS_27180) | tnpB | 6038123..6038482 (+) | 360 | WP_007247726.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| ACKUFS_RS27185 (ACKUFS_27185) | tnpC | 6038499..6040031 (+) | 1533 | WP_007247725.1 | IS66 family transposase | - |
| ACKUFS_RS27190 (ACKUFS_27190) | yacG | 6040584..6040793 (-) | 210 | WP_007251656.1 | DNA gyrase inhibitor YacG | - |
| ACKUFS_RS27195 (ACKUFS_27195) | coaE | 6040790..6041413 (-) | 624 | WP_007251657.1 | dephospho-CoA kinase | - |
| ACKUFS_RS27200 (ACKUFS_27200) | pilD | 6041410..6042282 (-) | 873 | WP_007251658.1 | prepilin peptidase | Machinery gene |
| ACKUFS_RS27205 (ACKUFS_27205) | pilC | 6042284..6043501 (-) | 1218 | WP_007251659.1 | type II secretion system F family protein | Machinery gene |
| ACKUFS_RS27210 (ACKUFS_27210) | pilB | 6043504..6045198 (-) | 1695 | WP_007251660.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACKUFS_RS27215 (ACKUFS_27215) | - | 6045424..6045813 (+) | 390 | WP_007251661.1 | pilin | - |
| ACKUFS_RS27220 (ACKUFS_27220) | - | 6045978..6047285 (+) | 1308 | WP_080393985.1 | O-antigen ligase family protein | - |
| ACKUFS_RS27225 (ACKUFS_27225) | - | 6047458..6048744 (+) | 1287 | WP_042913808.1 | polysaccharide biosynthesis C-terminal domain-containing protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32133.32 Da Isoelectric Point: 7.9647
>NTDB_id=1089915 ACKUFS_RS27200 WP_007251658.1 6041410..6042282(-) (pilD) [Pseudomonas cannabina strain YM7930]
MPLLDLLASSPLAFITICSLLGLIIGSFLNVVVYRLPIMMERDWKAQSREMLGLPAEPDQPVFNLTLPNSSCPHCAHKIR
PWENLPIISYLLLRGKCSQCNAPISKRYPLVELTCALLSAYIAWHFGFGWQAAAMLVLSWGLLAMSLIDTDHQLLPDSLV
LPLLWLGLIVNSFRLFTSLSDALWGAVAGYLTLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRIRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR
MPLLDLLASSPLAFITICSLLGLIIGSFLNVVVYRLPIMMERDWKAQSREMLGLPAEPDQPVFNLTLPNSSCPHCAHKIR
PWENLPIISYLLLRGKCSQCNAPISKRYPLVELTCALLSAYIAWHFGFGWQAAAMLVLSWGLLAMSLIDTDHQLLPDSLV
LPLLWLGLIVNSFRLFTSLSDALWGAVAGYLTLWSVYWLFKLITGKEGMGHGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRIRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR
Nucleotide
Download Length: 873 bp
>NTDB_id=1089915 ACKUFS_RS27200 WP_007251658.1 6041410..6042282(-) (pilD) [Pseudomonas cannabina strain YM7930]
ATGCCCCTCCTCGACCTCTTGGCCAGCTCACCCCTGGCCTTCATCACTATCTGCTCTCTACTCGGCCTGATAATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGACTCCCAATCATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAAATGCTCGGCC
TCCCCGCCGAGCCGGACCAACCCGTCTTCAACCTGACTCTCCCCAACTCCAGTTGCCCACACTGCGCGCACAAGATCCGT
CCATGGGAAAACCTGCCGATCATCAGTTACCTGCTGCTGCGCGGCAAATGCTCACAATGCAACGCCCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGTGCACTGCTGTCAGCCTATATCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCTG
CGATGCTGGTGTTGAGCTGGGGCCTGTTGGCGATGAGTCTGATCGATACCGATCATCAGCTGTTGCCTGACTCGCTCGTG
CTGCCGCTGCTGTGGCTGGGCCTGATCGTCAACTCGTTCAGGCTGTTCACCTCGCTGAGTGATGCGCTGTGGGGCGCGGT
GGCCGGATACCTGACGCTGTGGTCGGTGTACTGGCTGTTTAAACTGATCACAGGCAAGGAAGGCATGGGCCATGGCGATT
TCAAGTTGCTGGCGATGCTTGGTGCCTGGGGAGGCTGGCAGATTTTGCCGCTGACCATTCTGTTGTCGTCGCTGGTGGGC
GCGGTGTTGGGCGTGATCATGATGCGTATTCGCCGGGTTGAAAGCGGCACGCCGATTCCCTTTGGTCCCTATCTGGCGAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA
ATGCCCCTCCTCGACCTCTTGGCCAGCTCACCCCTGGCCTTCATCACTATCTGCTCTCTACTCGGCCTGATAATCGGAAG
CTTCCTCAACGTAGTCGTCTACCGACTCCCAATCATGATGGAGCGCGACTGGAAAGCCCAATCCCGAGAAATGCTCGGCC
TCCCCGCCGAGCCGGACCAACCCGTCTTCAACCTGACTCTCCCCAACTCCAGTTGCCCACACTGCGCGCACAAGATCCGT
CCATGGGAAAACCTGCCGATCATCAGTTACCTGCTGCTGCGCGGCAAATGCTCACAATGCAACGCCCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGTGCACTGCTGTCAGCCTATATCGCCTGGCATTTCGGCTTTGGCTGGCAAGCGGCTG
CGATGCTGGTGTTGAGCTGGGGCCTGTTGGCGATGAGTCTGATCGATACCGATCATCAGCTGTTGCCTGACTCGCTCGTG
CTGCCGCTGCTGTGGCTGGGCCTGATCGTCAACTCGTTCAGGCTGTTCACCTCGCTGAGTGATGCGCTGTGGGGCGCGGT
GGCCGGATACCTGACGCTGTGGTCGGTGTACTGGCTGTTTAAACTGATCACAGGCAAGGAAGGCATGGGCCATGGCGATT
TCAAGTTGCTGGCGATGCTTGGTGCCTGGGGAGGCTGGCAGATTTTGCCGCTGACCATTCTGTTGTCGTCGCTGGTGGGC
GCGGTGTTGGGCGTGATCATGATGCGTATTCGCCGGGTTGAAAGCGGCACGCCGATTCCCTTTGGTCCCTATCTGGCGAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.064 |
97.586 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
50.883 |
97.586 |
0.497 |
| pilD | Acinetobacter baumannii D1279779 |
53.358 |
92.414 |
0.493 |
| pilD | Acinetobacter nosocomialis M2 |
53.358 |
92.414 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
50 |
92.414 |
0.462 |