Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACLZ2J_RS17020 Genome accession   NZ_CP178514
Coordinates   3220368..3221012 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain BS18-1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3215368..3226012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLZ2J_RS16985 mrpB 3216560..3216991 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  ACLZ2J_RS16990 mrpC 3216991..3217332 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  ACLZ2J_RS16995 mrpD 3217325..3218806 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  ACLZ2J_RS17000 mrpE 3218812..3219288 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  ACLZ2J_RS17005 mrpF 3219288..3219572 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  ACLZ2J_RS17010 mnhG 3219556..3219930 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  ACLZ2J_RS17015 yuxO 3219969..3220349 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  ACLZ2J_RS17020 comA 3220368..3221012 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  ACLZ2J_RS17025 comP 3221093..3223403 (-) 2311 Protein_3289 two-component system sensor histidine kinase ComP -
  ACLZ2J_RS17030 comX 3223418..3223585 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  ACLZ2J_RS17035 comQ 3223573..3224472 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  ACLZ2J_RS17040 degQ 3224657..3224797 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  ACLZ2J_RS17045 - 3225019..3225144 (+) 126 WP_003228793.1 hypothetical protein -
  ACLZ2J_RS17050 - 3225258..3225626 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=1089829 ACLZ2J_RS17020 WP_003220716.1 3220368..3221012(-) (comA) [Bacillus subtilis strain BS18-1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1089829 ACLZ2J_RS17020 WP_003220716.1 3220368..3221012(-) (comA) [Bacillus subtilis strain BS18-1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment