Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACL000_RS15620 Genome accession   NZ_CP178412
Coordinates   3258103..3258513 (-) Length   136 a.a.
NCBI ID   WP_005112082.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain L4793hy     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3253103..3263513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACL000_RS15590 (ACL000_15590) - 3253189..3253458 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ACL000_RS15595 (ACL000_15595) rapZ 3253455..3254306 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ACL000_RS15600 (ACL000_15600) panC 3254329..3255177 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ACL000_RS15605 (ACL000_15605) panB 3255181..3255990 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACL000_RS15610 (ACL000_15610) folK 3256036..3256518 (-) 483 WP_000219219.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACL000_RS15615 (ACL000_15615) pcnB 3256515..3257978 (-) 1464 WP_001194203.1 polynucleotide adenylyltransferase PcnB -
  ACL000_RS15620 (ACL000_15620) comEA 3258103..3258513 (-) 411 WP_005112082.1 ComEA family DNA-binding protein Machinery gene
  ACL000_RS15625 (ACL000_15625) mazG 3258482..3259288 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  ACL000_RS15630 (ACL000_15630) - 3259400..3260173 (+) 774 WP_000682844.1 SDR family oxidoreductase -
  ACL000_RS15635 (ACL000_15635) - 3260218..3262524 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15654.94 Da        Isoelectric Point: 10.4475

>NTDB_id=1089568 ACL000_RS15620 WP_005112082.1 3258103..3258513(-) (comEA) [Acinetobacter baumannii strain L4793hy]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDKNFQEWKAKQQMYDQKLNISKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1089568 ACL000_RS15620 WP_005112082.1 3258103..3258513(-) (comEA) [Acinetobacter baumannii strain L4793hy]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATAAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCTCTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCCATTTTTGAAAAAAATAAATCACGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baumannii strain A118

95.588

100

0.956
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404

Multiple sequence alignment