Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   GT95_RS09345 Genome accession   NZ_CP008813
Coordinates   1792508..1793017 (-) Length   169 a.a.
NCBI ID   WP_001883456.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain C001     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1787508..1798017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GT95_RS09320 (GT95_09025) tsaD 1788017..1789027 (-) 1011 WP_000655084.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GT95_RS09325 (GT95_09030) rimI 1789103..1789510 (-) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  GT95_RS09330 (GT95_09035) tsaB 1789512..1790204 (-) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  GT95_RS09335 (GT95_09040) - 1790383..1790613 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  GT95_RS09340 (GT95_09045) - 1790667..1792346 (+) 1680 WP_000065498.1 ribonuclease J -
  GT95_RS09345 (GT95_09050) lytF 1792508..1793017 (-) 510 WP_001883456.1 CHAP domain-containing protein Regulator
  GT95_RS09350 (GT95_09055) glnA 1793165..1794511 (-) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  GT95_RS09355 (GT95_09060) - 1794545..1794916 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  GT95_RS09360 (GT95_09065) - 1794996..1795535 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  GT95_RS09365 (GT95_09070) - 1795798..1796994 (-) 1197 WP_069107344.1 phosphoglycerate kinase -
  GT95_RS09370 (GT95_09075) - 1797129..1797998 (-) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18360.32 Da        Isoelectric Point: 4.4055

>NTDB_id=108950 GT95_RS09345 WP_001883456.1 1792508..1793017(-) (lytF) [Streptococcus agalactiae strain C001]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADVNTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=108950 GT95_RS09345 WP_001883456.1 1792508..1793017(-) (lytF) [Streptococcus agalactiae strain C001]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGTGAATACATATAACTATGCAGTAGATGTAGACTATCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment