Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | ACLRDL_RS00425 | Genome accession | NZ_CP178387 |
| Coordinates | 71760..72344 (-) | Length | 194 a.a. |
| NCBI ID | WP_000902746.1 | Uniprot ID | - |
| Organism | Vibrio cholerae isolate CTMA_1842 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 66760..77344
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACLRDL_RS00400 (ACLRDL_00400) | aroB | 67104..68189 (-) | 1086 | WP_000439805.1 | 3-dehydroquinate synthase | - |
| ACLRDL_RS00405 (ACLRDL_00405) | aroK | 68217..68741 (-) | 525 | WP_000818616.1 | shikimate kinase AroK | - |
| ACLRDL_RS00410 (ACLRDL_00410) | pilQ | 68928..70643 (-) | 1716 | WP_000788426.1 | type IV pilus secretin PilQ | Machinery gene |
| ACLRDL_RS00415 (ACLRDL_00415) | pilP | 70669..71187 (-) | 519 | WP_000792033.1 | pilus assembly protein PilP | Machinery gene |
| ACLRDL_RS00420 (ACLRDL_00420) | pilO | 71177..71767 (-) | 591 | WP_000157688.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| ACLRDL_RS00425 (ACLRDL_00425) | pilN | 71760..72344 (-) | 585 | WP_000902746.1 | PilN domain-containing protein | Machinery gene |
| ACLRDL_RS00430 (ACLRDL_00430) | pilM | 72334..73350 (-) | 1017 | WP_000520444.1 | type IV pilus assembly protein PilM | Machinery gene |
| ACLRDL_RS00435 (ACLRDL_00435) | - | 73493..75970 (+) | 2478 | WP_000668736.1 | penicillin-binding protein 1A | - |
| ACLRDL_RS00440 (ACLRDL_00440) | oxyR | 76046..76939 (-) | 894 | WP_001025909.1 | DNA-binding transcriptional regulator OxyR | - |
Sequence
Protein
Download Length: 194 a.a. Molecular weight: 22022.45 Da Isoelectric Point: 9.7294
>NTDB_id=1089368 ACLRDL_RS00425 WP_000902746.1 71760..72344(-) (pilN) [Vibrio cholerae isolate CTMA_1842]
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
MLHKVNLLPWRDARREAHKRRFLGLVTLGVLLAVLMQFAAGEYLGGQMALQQERIGYLQQHIFSLDQQIAKLKIAEEEHK
ALLTRLTVVEQLQQKRNKTTEFMNQMPNLIPEGVYVDKIKMNGHQIEITGISDSTARLATMLDNLEKSDKLTDVEMHEIV
SGNKRFGKQFQSFKVSFQILTPASNPQEGGAHNG
Nucleotide
Download Length: 585 bp
>NTDB_id=1089368 ACLRDL_RS00425 WP_000902746.1 71760..72344(-) (pilN) [Vibrio cholerae isolate CTMA_1842]
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCCGGTGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
ATGTTGCATAAGGTCAACTTACTGCCGTGGCGTGATGCACGGCGTGAAGCACATAAGCGGCGCTTTTTGGGGTTAGTGAC
ACTCGGTGTTTTGCTGGCGGTGTTGATGCAATTTGCCGCCGGTGAATACTTGGGCGGACAAATGGCTTTGCAGCAAGAGC
GGATTGGTTATTTGCAACAACATATCTTCTCGCTGGATCAGCAGATCGCTAAGTTGAAGATCGCTGAAGAAGAACATAAG
GCGTTATTGACCCGTTTGACTGTGGTGGAGCAACTGCAGCAAAAGCGCAATAAAACGACTGAGTTTATGAACCAAATGCC
CAACCTGATCCCTGAAGGCGTCTATGTCGACAAGATCAAGATGAATGGCCATCAGATAGAAATAACCGGGATTAGCGATT
CCACCGCTCGCTTGGCAACCATGCTCGATAACTTGGAGAAGTCGGACAAATTAACCGATGTTGAAATGCATGAAATCGTT
TCAGGGAATAAGCGATTTGGTAAGCAATTTCAGAGCTTTAAAGTCTCCTTCCAAATTTTAACCCCAGCCTCTAACCCGCA
AGAGGGAGGTGCACACAATGGCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio cholerae strain A1552 |
99.485 |
100 |
0.995 |
| pilN | Vibrio campbellii strain DS40M4 |
60.452 |
91.237 |
0.552 |