Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACLNGX_RS16955 Genome accession   NZ_CP178374
Coordinates   3477010..3477699 (-) Length   229 a.a.
NCBI ID   WP_204530637.1    Uniprot ID   -
Organism   Bacillus velezensis strain 2023     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3472010..3482699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLNGX_RS16920 (ACLNGX_16920) fliW 3472101..3472532 (-) 432 WP_317461594.1 flagellar assembly protein FliW -
  ACLNGX_RS16925 (ACLNGX_16925) - 3472562..3473131 (-) 570 WP_098081805.1 DUF6470 family protein -
  ACLNGX_RS16930 (ACLNGX_16930) flgL 3473222..3474139 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  ACLNGX_RS16935 (ACLNGX_16935) flgK 3474151..3475668 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  ACLNGX_RS16940 (ACLNGX_16940) - 3475684..3476166 (-) 483 WP_003151394.1 flagellar protein FlgN -
  ACLNGX_RS16945 (ACLNGX_16945) flgM 3476181..3476447 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLNGX_RS16950 (ACLNGX_16950) - 3476517..3476936 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  ACLNGX_RS16955 (ACLNGX_16955) comFC 3477010..3477699 (-) 690 WP_204530637.1 phosphoribosyltransferase family protein Machinery gene
  ACLNGX_RS16960 (ACLNGX_16960) - 3477705..3477989 (-) 285 WP_017418816.1 late competence development ComFB family protein -
  ACLNGX_RS16965 (ACLNGX_16965) comFA 3478047..3479432 (-) 1386 WP_317461593.1 DEAD/DEAH box helicase Machinery gene
  ACLNGX_RS16970 (ACLNGX_16970) - 3479540..3480388 (-) 849 WP_003151387.1 DegV family protein -
  ACLNGX_RS16975 (ACLNGX_16975) degU 3480486..3481175 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLNGX_RS16980 (ACLNGX_16980) degS 3481252..3482415 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25332.01 Da        Isoelectric Point: 8.2927

>NTDB_id=1089179 ACLNGX_RS16955 WP_204530637.1 3477010..3477699(-) (comFC) [Bacillus velezensis strain 2023]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1089179 ACLNGX_RS16955 WP_204530637.1 3477010..3477699(-) (comFC) [Bacillus velezensis strain 2023]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTTTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment