Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACLUR6_RS14955 Genome accession   NZ_CP178250
Coordinates   3186189..3186599 (-) Length   136 a.a.
NCBI ID   WP_005124713.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ACI     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3181189..3191599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLUR6_RS14925 (ACLUR6_14925) - 3181275..3181544 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  ACLUR6_RS14930 (ACLUR6_14930) rapZ 3181541..3182392 (-) 852 WP_000821671.1 RNase adapter RapZ -
  ACLUR6_RS14935 (ACLUR6_14935) panC 3182415..3183263 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  ACLUR6_RS14940 (ACLUR6_14940) panB 3183267..3184076 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACLUR6_RS14945 (ACLUR6_14945) folK 3184122..3184604 (-) 483 WP_031987940.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACLUR6_RS14950 (ACLUR6_14950) pcnB 3184601..3186064 (-) 1464 WP_031987942.1 polynucleotide adenylyltransferase PcnB -
  ACLUR6_RS14955 (ACLUR6_14955) comEA 3186189..3186599 (-) 411 WP_005124713.1 ComEA family DNA-binding protein Machinery gene
  ACLUR6_RS14960 (ACLUR6_14960) mazG 3186568..3187374 (-) 807 WP_168726908.1 nucleoside triphosphate pyrophosphohydrolase -
  ACLUR6_RS14965 (ACLUR6_14965) - 3187486..3188259 (+) 774 WP_102759853.1 SDR family oxidoreductase -
  ACLUR6_RS14970 (ACLUR6_14970) - 3188304..3190610 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15626.92 Da        Isoelectric Point: 10.3495

>NTDB_id=1088708 ACLUR6_RS14955 WP_005124713.1 3186189..3186599(-) (comEA) [Acinetobacter baumannii strain ACI]
MQYSMRFWKNKYFLLIMLCLGVISPSVCAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=1088708 ACLUR6_RS14955 WP_005124713.1 3186189..3186599(-) (comEA) [Acinetobacter baumannii strain ACI]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTCTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTGCGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGTTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

100

100

1
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

43.511

96.324

0.419

Multiple sequence alignment