Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACLFAM_RS11660 Genome accession   NZ_CP178226
Coordinates   2311128..2312450 (-) Length   440 a.a.
NCBI ID   WP_039115354.1    Uniprot ID   -
Organism   Lactococcus lactis strain L-WY410     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2306128..2317450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLFAM_RS11630 (ACLFAM_11630) - 2307271..2308239 (+) 969 WP_003130649.1 PhoH family protein -
  ACLFAM_RS11635 (ACLFAM_11635) - 2308297..2308776 (+) 480 WP_039115350.1 NUDIX hydrolase -
  ACLFAM_RS11640 (ACLFAM_11640) ybeY 2308928..2309416 (+) 489 WP_021722516.1 rRNA maturation RNase YbeY -
  ACLFAM_RS11645 (ACLFAM_11645) - 2309400..2309855 (+) 456 WP_003130653.1 diacylglycerol kinase family protein -
  ACLFAM_RS11650 (ACLFAM_11650) - 2309869..2310447 (+) 579 WP_021722515.1 nucleotidyltransferase family protein -
  ACLFAM_RS11655 (ACLFAM_11655) comFC 2310481..2310885 (-) 405 WP_230593148.1 ComF family protein Machinery gene
  ACLFAM_RS11660 (ACLFAM_11660) comFA 2311128..2312450 (-) 1323 WP_039115354.1 DEAD/DEAH box helicase Machinery gene
  ACLFAM_RS11665 (ACLFAM_11665) - 2312507..2313136 (+) 630 WP_003130660.1 YigZ family protein -
  ACLFAM_RS11670 (ACLFAM_11670) - 2313270..2313767 (+) 498 WP_003130662.1 VanZ family protein -
  ACLFAM_RS11675 (ACLFAM_11675) - 2313815..2314834 (+) 1020 WP_012897709.1 DUF475 domain-containing protein -
  ACLFAM_RS11680 (ACLFAM_11680) - 2314949..2315695 (+) 747 WP_023189339.1 bifunctional metallophosphatase/5'-nucleotidase -
  ACLFAM_RS11685 (ACLFAM_11685) glyQ 2315981..2316934 (+) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50088.55 Da        Isoelectric Point: 10.1065

>NTDB_id=1088579 ACLFAM_RS11660 WP_039115354.1 2311128..2312450(-) (comFA) [Lactococcus lactis strain L-WY410]
MSTNQEKLFGRLLLKNDILQLIKSTDKISVSKIFSNFLLEAKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRLKEAFDLLIIDEVDAFSFRDNEMLYF
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIES
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=1088579 ACLFAM_RS11660 WP_039115354.1 2311128..2312450(-) (comFA) [Lactococcus lactis strain L-WY410]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAGCGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCGGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTCTGTCAAGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAACAAATTTTAGAAAGC
GGTGGAGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTGAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTTCCTTTAGAGATAATGAAATGCTTTATTTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCACGTCGTTTTCACAATTTTCCTTTAGTCGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATCT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACTTCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAACCAACTGGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(300-403)

Type III restriction enzyme, res subunit (ResIII)

(114-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

74

90.909

0.673
  comFA/cflA Streptococcus mitis SK321

51.508

90.455

0.466
  comFA/cflA Streptococcus pneumoniae Rx1

51.508

90.455

0.466
  comFA/cflA Streptococcus pneumoniae D39

51.508

90.455

0.466
  comFA/cflA Streptococcus pneumoniae R6

51.508

90.455

0.466
  comFA/cflA Streptococcus pneumoniae TIGR4

51.508

90.455

0.466
  comFA/cflA Streptococcus mitis NCTC 12261

50.754

90.455

0.459
  comFA Bacillus subtilis subsp. subtilis str. 168

37.029

100

0.38

Multiple sequence alignment