Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACLII2_RS03025 Genome accession   NZ_CP178213
Coordinates   575578..576300 (+) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 570578..581300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS03000 degS 570889..572046 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACLII2_RS03005 degU 572129..572818 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLII2_RS03010 fakBA 572916..573761 (+) 846 WP_003244125.1 DegV family protein -
  ACLII2_RS03015 comFA 573867..575258 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ACLII2_RS03020 comFB 575318..575614 (+) 297 WP_003227989.1 late competence protein ComFB -
  ACLII2_RS03025 comFC 575578..576300 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  ACLII2_RS03030 yvyF 576374..576793 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACLII2_RS03035 flgM 576874..577140 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLII2_RS03040 flgN 577156..577638 (+) 483 WP_003227999.1 flagellar protein FlgN -
  ACLII2_RS03045 flgK 577657..579180 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  ACLII2_RS03050 flgL 579191..580087 (+) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  ACLII2_RS03055 yviE 580134..580709 (+) 576 WP_003243053.1 DUF6470 family protein -
  ACLII2_RS03060 fliW 580730..581161 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=1088275 ACLII2_RS03025 WP_003227991.1 575578..576300(+) (comFC) [Bacillus subtilis subsp. subtilis strain BM107]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1088275 ACLII2_RS03025 WP_003227991.1 575578..576300(+) (comFC) [Bacillus subtilis subsp. subtilis strain BM107]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment