Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACLII2_RS03005 Genome accession   NZ_CP178213
Coordinates   572129..572818 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis subsp. subtilis strain BM107     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 567129..577818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLII2_RS02985 tagO 567695..568771 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  ACLII2_RS02990 tagV 568844..570019 (-) 1176 WP_003244117.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ACLII2_RS02995 yvyE 570019..570672 (-) 654 WP_003227979.1 YigZ family protein -
  ACLII2_RS03000 degS 570889..572046 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ACLII2_RS03005 degU 572129..572818 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACLII2_RS03010 fakBA 572916..573761 (+) 846 WP_003244125.1 DegV family protein -
  ACLII2_RS03015 comFA 573867..575258 (+) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  ACLII2_RS03020 comFB 575318..575614 (+) 297 WP_003227989.1 late competence protein ComFB -
  ACLII2_RS03025 comFC 575578..576300 (+) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  ACLII2_RS03030 yvyF 576374..576793 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ACLII2_RS03035 flgM 576874..577140 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACLII2_RS03040 flgN 577156..577638 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1088273 ACLII2_RS03005 WP_003219701.1 572129..572818(+) (degU) [Bacillus subtilis subsp. subtilis strain BM107]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1088273 ACLII2_RS03005 WP_003219701.1 572129..572818(+) (degU) [Bacillus subtilis subsp. subtilis strain BM107]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment