Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA1   Type   Machinery gene
Locus tag   AB4Y54_RS04275 Genome accession   NZ_AP031325
Coordinates   764286..764756 (-) Length   156 a.a.
NCBI ID   WP_165739610.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 759286..769756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y54_RS04245 (TthTF21_08320) - 759490..760032 (-) 543 WP_353300788.1 Uma2 family endonuclease -
  AB4Y54_RS04250 (TthTF21_08330) - 760153..760458 (-) 306 WP_353300789.1 DUF1640 domain-containing protein -
  AB4Y54_RS04255 (TthTF21_08340) - 760707..761057 (-) 351 WP_353300790.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB4Y54_RS04260 (TthTF21_08350) comZ 761288..762961 (-) 1674 WP_353300791.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  AB4Y54_RS04265 (TthTF21_08360) pilA/pilA3 762972..763673 (-) 702 WP_014629427.1 PilW family protein Machinery gene
  AB4Y54_RS04270 (TthTF21_08370) pilA/pilA2 763670..764251 (-) 582 WP_353300792.1 type II secretion system protein Machinery gene
  AB4Y54_RS04275 (TthTF21_08380) pilA/pilA1 764286..764756 (-) 471 WP_165739610.1 GspH/FimT family protein Machinery gene
  AB4Y54_RS04280 (TthTF21_08390) - 764922..765902 (+) 981 WP_353300793.1 YpdA family putative bacillithiol disulfide reductase -
  AB4Y54_RS04285 (TthTF21_08400) ilvB 766058..767746 (+) 1689 WP_353300794.1 biosynthetic-type acetolactate synthase large subunit -
  AB4Y54_RS04290 (TthTF21_08410) ilvN 767743..768255 (+) 513 WP_353300795.1 acetolactate synthase small subunit -
  AB4Y54_RS04295 (TthTF21_08420) ilvC 768252..769265 (+) 1014 WP_011173279.1 ketol-acid reductoisomerase -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 16962.73 Da        Isoelectric Point: 11.2535

>NTDB_id=108706 AB4Y54_RS04275 WP_165739610.1 764286..764756(-) (pilA/pilA1) [Thermus thermophilus strain TF21]
MTRRGLTLLELLLVLGILGVLLGLALPLLSPNRLALDQAARSLAAQVTRARLEAIRRNTFVGLQVFTEGAGGYLLFVDQN
ANRRYDPGEEFGATRFGQGDWARVRLDPEKSALGNMPLLFDPRGIPAKPITATLVLTSGDATRKVVISQQGRARLE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=108706 AB4Y54_RS04275 WP_165739610.1 764286..764756(-) (pilA/pilA1) [Thermus thermophilus strain TF21]
ATGACGCGGCGGGGCCTTACCCTTTTGGAGCTCCTGCTGGTCTTGGGCATCCTGGGGGTCCTCCTAGGGCTGGCCCTTCC
ACTTCTTTCCCCCAACCGCCTCGCCCTGGACCAGGCCGCCCGCTCCCTCGCCGCCCAGGTGACCCGGGCAAGGCTCGAGG
CCATCCGCCGGAACACCTTCGTGGGCCTTCAGGTGTTCACCGAAGGAGCGGGGGGTTACTTGCTCTTCGTGGACCAAAAC
GCCAACCGCCGCTACGACCCCGGGGAGGAGTTCGGCGCGACCCGCTTCGGCCAAGGGGACTGGGCCCGGGTGCGCCTGGA
CCCGGAGAAGAGCGCCCTCGGCAACATGCCTCTTCTCTTTGACCCCCGGGGCATCCCGGCCAAACCCATCACCGCCACCC
TGGTTCTCACCTCGGGAGACGCCACCCGCAAGGTGGTCATCTCCCAGCAGGGCCGGGCCCGCCTGGAGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type II transport protein GspH (GspH)

(39-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA1 Thermus thermophilus HB27

96.795

100

0.968

Multiple sequence alignment