Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilA2   Type   Machinery gene
Locus tag   AB4Y54_RS04270 Genome accession   NZ_AP031325
Coordinates   763670..764251 (-) Length   193 a.a.
NCBI ID   WP_353300792.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 758670..769251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y54_RS04235 (TthTF21_08300) - 758819..759181 (-) 363 WP_060384345.1 DUF86 domain-containing protein -
  AB4Y54_RS04240 (TthTF21_08310) - 759168..759467 (-) 300 WP_008631315.1 nucleotidyltransferase -
  AB4Y54_RS04245 (TthTF21_08320) - 759490..760032 (-) 543 WP_353300788.1 Uma2 family endonuclease -
  AB4Y54_RS04250 (TthTF21_08330) - 760153..760458 (-) 306 WP_353300789.1 DUF1640 domain-containing protein -
  AB4Y54_RS04255 (TthTF21_08340) - 760707..761057 (-) 351 WP_353300790.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB4Y54_RS04260 (TthTF21_08350) comZ 761288..762961 (-) 1674 WP_353300791.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  AB4Y54_RS04265 (TthTF21_08360) pilA/pilA3 762972..763673 (-) 702 WP_014629427.1 PilW family protein Machinery gene
  AB4Y54_RS04270 (TthTF21_08370) pilA/pilA2 763670..764251 (-) 582 WP_353300792.1 type II secretion system protein Machinery gene
  AB4Y54_RS04275 (TthTF21_08380) pilA/pilA1 764286..764756 (-) 471 WP_165739610.1 GspH/FimT family protein Machinery gene
  AB4Y54_RS04280 (TthTF21_08390) - 764922..765902 (+) 981 WP_353300793.1 YpdA family putative bacillithiol disulfide reductase -
  AB4Y54_RS04285 (TthTF21_08400) ilvB 766058..767746 (+) 1689 WP_353300794.1 biosynthetic-type acetolactate synthase large subunit -
  AB4Y54_RS04290 (TthTF21_08410) ilvN 767743..768255 (+) 513 WP_353300795.1 acetolactate synthase small subunit -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 20454.32 Da        Isoelectric Point: 8.4736

>NTDB_id=108705 AB4Y54_RS04270 WP_353300792.1 763670..764251(-) (pilA/pilA2) [Thermus thermophilus strain TF21]
MRKGLTLVEVLIALAVLGVAFGALLMSQVSNLRANAQARFATDAKAAAVQVLERRSAEVLKSEIVPASSPYKDAPLDPDN
PSGNWRSFYFVDYYFSCPTQVAPSPKQRGGSANNLRPDLTCSGTETVGDIPVAWSIRGESGILGEGVVTVVVTATHPRGP
KVTMGRRVTCYDVYPSPTQDQPAPCPPPGGGRP

Nucleotide


Download         Length: 582 bp        

>NTDB_id=108705 AB4Y54_RS04270 WP_353300792.1 763670..764251(-) (pilA/pilA2) [Thermus thermophilus strain TF21]
ATGAGAAAAGGTCTTACCCTCGTGGAAGTCCTCATCGCCTTAGCCGTCTTGGGAGTGGCCTTCGGCGCTCTCCTTATGAG
CCAGGTTTCCAATCTCAGGGCGAACGCCCAGGCCCGCTTCGCCACCGACGCCAAGGCCGCCGCCGTCCAGGTTCTGGAGC
GCCGCTCGGCCGAGGTGCTGAAAAGCGAAATCGTCCCGGCCTCAAGCCCCTACAAGGACGCGCCCTTGGACCCTGATAAC
CCTTCGGGAAACTGGCGGAGCTTTTACTTCGTGGACTACTACTTCTCCTGCCCCACCCAGGTGGCCCCTTCCCCTAAACA
GCGGGGAGGATCTGCAAACAACCTTCGCCCCGACCTCACCTGCTCGGGCACGGAGACGGTCGGGGACATCCCCGTGGCCT
GGAGCATCCGCGGGGAAAGCGGCATCCTGGGCGAGGGCGTGGTGACGGTGGTGGTCACGGCCACCCATCCCCGGGGGCCC
AAGGTCACCATGGGCCGCCGGGTCACCTGCTACGACGTCTACCCTTCCCCCACCCAGGACCAGCCCGCCCCTTGCCCGCC
CCCGGGAGGTGGTCGCCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilA2 Thermus thermophilus HB27

88.108

95.855

0.845

Multiple sequence alignment