Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Machinery gene
Locus tag   AB4Y54_RS04260 Genome accession   NZ_AP031325
Coordinates   761288..762961 (-) Length   557 a.a.
NCBI ID   WP_353300791.1    Uniprot ID   -
Organism   Thermus thermophilus strain TF21     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756288..767961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB4Y54_RS04220 (TthTF21_08270) trpS 756546..757559 (+) 1014 WP_018461708.1 tryptophan--tRNA ligase -
  AB4Y54_RS04225 (TthTF21_08280) - 757556..758212 (+) 657 WP_353300786.1 chromosome segregation protein ScpA -
  AB4Y54_RS04230 (TthTF21_08290) - 758231..758785 (+) 555 WP_353300787.1 Uma2 family endonuclease -
  AB4Y54_RS04235 (TthTF21_08300) - 758819..759181 (-) 363 WP_060384345.1 DUF86 domain-containing protein -
  AB4Y54_RS04240 (TthTF21_08310) - 759168..759467 (-) 300 WP_008631315.1 nucleotidyltransferase -
  AB4Y54_RS04245 (TthTF21_08320) - 759490..760032 (-) 543 WP_353300788.1 Uma2 family endonuclease -
  AB4Y54_RS04250 (TthTF21_08330) - 760153..760458 (-) 306 WP_353300789.1 DUF1640 domain-containing protein -
  AB4Y54_RS04255 (TthTF21_08340) - 760707..761057 (-) 351 WP_353300790.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  AB4Y54_RS04260 (TthTF21_08350) comZ 761288..762961 (-) 1674 WP_353300791.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  AB4Y54_RS04265 (TthTF21_08360) pilA/pilA3 762972..763673 (-) 702 WP_014629427.1 PilW family protein Machinery gene
  AB4Y54_RS04270 (TthTF21_08370) pilA/pilA2 763670..764251 (-) 582 WP_353300792.1 type II secretion system protein Machinery gene
  AB4Y54_RS04275 (TthTF21_08380) pilA/pilA1 764286..764756 (-) 471 WP_165739610.1 GspH/FimT family protein Machinery gene
  AB4Y54_RS04280 (TthTF21_08390) - 764922..765902 (+) 981 WP_353300793.1 YpdA family putative bacillithiol disulfide reductase -
  AB4Y54_RS04285 (TthTF21_08400) ilvB 766058..767746 (+) 1689 WP_353300794.1 biosynthetic-type acetolactate synthase large subunit -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 59491.14 Da        Isoelectric Point: 8.4267

>NTDB_id=108703 AB4Y54_RS04260 WP_353300791.1 761288..762961(-) (comZ) [Thermus thermophilus strain TF21]
MNAKGIALVATLALMVVIALLVFGTFFTTQIELWTTRNDTTSVQAFYAAEAGLQKYKAALFQQYVWREQSGTGGGSGCFT
SLVTGLDLYRNGTVMPFANNQLVLAQNEVVTDANGNPVGRYTATLYKDAQDGQLFTLVSEGTSGGAKARVQATFRISNTG
YLEQAIFAGAGQANKWLNGGATIRGGVYVVGNPNDPDQYVIEANGNFALYNWYDLNTYSGVANRVEPSYQRAQDLCASLR
VQYGKISVGGSTQIGEPNNKVKGVFVGRGAQDITGQNVGVCQNNKGVCTEAMGGFDLSDPPPFPTLDAKLDSEACKDYST
WRACLQGKAALRIQRIGNILSVASPPNATLSPSCLQAMQSGTLTLDTQGVDCTFTRLDGSQGGFRYTYTGDKKSGQGLLE
IFGDVVLEGINVVLNRPVDYRAQSGSTKSATLAVLKLNGKGGNLDINGNLLPDATFGLFPNHALGFVAEGDIYQRGQHVM
APVYAGGTFRVVKGNVLFGSVISNQFCTTSAGNQTNCNAGQKAEVVYIRIPKENRPALLPSLRGGKPVFQVLSYERR

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=108703 AB4Y54_RS04260 WP_353300791.1 761288..762961(-) (comZ) [Thermus thermophilus strain TF21]
GTGAACGCGAAAGGTATCGCCCTCGTAGCCACTTTGGCCCTCATGGTGGTCATCGCCCTCCTCGTCTTCGGCACCTTCTT
CACCACCCAGATAGAGCTCTGGACCACCCGCAACGACACCACCTCGGTCCAGGCCTTCTACGCCGCCGAGGCGGGGTTGC
AGAAGTACAAGGCCGCCCTCTTCCAGCAGTACGTCTGGCGGGAGCAGAGCGGGACGGGGGGAGGTAGCGGCTGCTTCACT
TCCCTGGTAACGGGGCTAGACCTGTACCGGAATGGAACCGTTATGCCTTTCGCCAACAACCAGCTGGTCCTGGCGCAAAA
CGAGGTGGTTACCGATGCCAACGGCAACCCCGTGGGGCGGTACACGGCAACCCTTTACAAGGACGCCCAAGACGGCCAGC
TCTTCACCCTGGTCTCCGAGGGCACCTCGGGCGGGGCCAAGGCCCGGGTCCAGGCCACCTTCCGCATCAGCAACACGGGC
TACCTGGAGCAGGCCATCTTCGCCGGCGCGGGCCAGGCCAACAAGTGGCTGAACGGCGGGGCCACCATCCGGGGCGGGGT
CTATGTGGTGGGAAACCCTAACGACCCGGACCAGTACGTCATAGAGGCCAACGGCAACTTCGCCCTCTACAACTGGTATG
ACCTTAACACCTACTCCGGGGTCGCCAACCGGGTGGAACCCAGCTACCAGCGGGCCCAGGACCTCTGCGCAAGCCTTAGG
GTGCAGTATGGCAAGATTTCCGTGGGAGGAAGCACCCAGATTGGCGAGCCCAACAACAAGGTGAAGGGGGTCTTCGTGGG
CCGGGGTGCCCAGGACATCACTGGGCAGAACGTGGGCGTATGCCAGAACAACAAAGGGGTCTGCACCGAGGCCATGGGGG
GCTTTGACCTCTCCGACCCGCCCCCCTTCCCCACCCTGGACGCCAAGCTGGACTCCGAGGCCTGCAAGGACTACTCCACC
TGGCGGGCCTGCCTCCAGGGCAAGGCCGCTTTAAGAATCCAGCGCATCGGGAACATCCTCTCCGTGGCCAGCCCGCCTAA
CGCTACCTTGTCCCCCTCCTGCCTCCAGGCCATGCAGTCCGGCACCCTGACCCTGGACACCCAGGGCGTGGACTGCACCT
TCACCCGTCTGGACGGAAGCCAGGGAGGGTTCAGGTACACCTACACGGGCGACAAGAAGAGCGGGCAGGGGCTTTTGGAG
ATCTTCGGCGACGTGGTACTGGAGGGTATAAACGTGGTGCTCAACCGGCCCGTGGACTATAGGGCCCAGTCGGGGAGCAC
CAAGAGCGCCACCCTTGCGGTGCTGAAGCTTAACGGCAAAGGCGGCAACCTGGACATCAACGGCAACCTCCTCCCCGACG
CCACCTTTGGCCTCTTCCCCAACCACGCCCTGGGCTTCGTGGCCGAAGGGGACATCTACCAGCGCGGCCAGCACGTGATG
GCCCCCGTGTACGCCGGGGGCACCTTCCGGGTGGTGAAGGGCAACGTCCTCTTCGGCTCCGTCATTAGCAACCAGTTCTG
CACCACAAGCGCCGGGAACCAAACGAACTGCAACGCCGGTCAGAAGGCCGAGGTGGTCTACATCCGCATCCCCAAGGAGA
ACCGCCCCGCGCTCCTGCCGAGCCTCCGCGGGGGGAAGCCCGTCTTCCAGGTACTCTCCTATGAGCGCCGCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Thermus thermophilus HB27

92.294

100

0.925

Multiple sequence alignment