Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SP5448_RS08000 Genome accession   NZ_CP008776
Coordinates   1585466..1585945 (-) Length   159 a.a.
NCBI ID   WP_323740326.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 5448     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1580466..1590945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP5448_RS07980 (SP5448_08285) - 1580635..1581240 (-) 606 WP_010922658.1 response regulator transcription factor -
  SP5448_RS07985 (SP5448_08290) - 1581221..1582783 (-) 1563 WP_011285713.1 ATP-binding protein -
  SP5448_RS07990 (SP5448_08295) - 1582823..1584730 (-) 1908 WP_010922659.1 FtsX-like permease family protein -
  SP5448_RS07995 (SP5448_08300) - 1584732..1585469 (-) 738 WP_000812013.1 ABC transporter ATP-binding protein -
  SP5448_RS08000 (SP5448_08305) rcrQ 1585466..1585945 (-) 480 WP_323740326.1 ABC transporter ATP-binding protein Regulator
  SP5448_RS08005 (SP5448_08310) - 1586001..1587626 (-) 1626 WP_011285715.1 DUF4135 domain-containing protein -
  SP5448_RS08010 (SP5448_08315) - 1587709..1587864 (-) 156 WP_002982773.1 type A2 lanthipeptide -
  SP5448_RS08015 (SP5448_08320) lacG 1588367..1589773 (-) 1407 WP_010922661.1 6-phospho-beta-galactosidase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18613.42 Da        Isoelectric Point: 6.9594

>NTDB_id=108635 SP5448_RS08000 WP_323740326.1 1585466..1585945(-) (rcrQ) [Streptococcus pyogenes strain 5448]
MFDGDVMYNILLGRESVTEKQVIEICKRVSLYEDIRSMPMKFHTPLFRDNPSLSGGQKQRISLARELVTTPRILVLDEPT
SALDVKTERIIQKNVEALHCTRVLVTHRLNTVEKADKILIMDNGKIIDYGNHHYLYKNNKDYCDLYDSYMNKYQEEEVK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=108635 SP5448_RS08000 WP_323740326.1 1585466..1585945(-) (rcrQ) [Streptococcus pyogenes strain 5448]
ATATTTGATGGGGATGTGATGTATAACATTTTGCTAGGAAGAGAATCTGTTACAGAAAAACAAGTTATTGAAATCTGTAA
AAGGGTATCACTATATGAGGATATCAGGAGTATGCCAATGAAGTTTCATACCCCACTTTTTCGAGACAATCCATCACTAT
CTGGGGGGCAAAAACAACGAATTTCTCTAGCAAGAGAGTTAGTAACTACCCCTAGAATCTTAGTTCTTGATGAACCTACA
TCAGCTTTAGATGTAAAAACTGAAAGAATAATCCAAAAAAATGTTGAGGCTTTACATTGTACGAGGGTTTTGGTTACCCA
TAGACTTAATACAGTTGAAAAAGCTGATAAGATTTTAATAATGGATAATGGCAAAATTATTGACTATGGAAACCATCATT
ATTTGTACAAAAATAATAAGGATTATTGTGACTTATATGACTCGTATATGAATAAATATCAGGAGGAAGAGGTAAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.975

99.371

0.377
  comA Streptococcus mitis NCTC 12261

39.597

93.711

0.371
  comA Streptococcus pneumoniae Rx1

38.926

93.711

0.365
  comA Streptococcus pneumoniae R6

38.926

93.711

0.365
  comA Streptococcus mitis SK321

38.926

93.711

0.365
  comA Streptococcus pneumoniae D39

38.926

93.711

0.365
  comA Streptococcus pneumoniae TIGR4

38.926

93.711

0.365

Multiple sequence alignment