Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK3BE_RS07865 Genome accession   NZ_CP177237
Coordinates   1751137..1751772 (+) Length   211 a.a.
NCBI ID   WP_010461893.1    Uniprot ID   A0A024E8F0
Organism   Pseudomonas mandelii strain VR4' HT30-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1746137..1756772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3BE_RS07845 (ACK3BE_07845) - 1746300..1747232 (+) 933 WP_010461902.1 ABC transporter ATP-binding protein -
  ACK3BE_RS07850 (ACK3BE_07850) - 1747229..1748008 (+) 780 WP_010461900.1 ABC transporter permease -
  ACK3BE_RS07855 (ACK3BE_07855) - 1748150..1748668 (-) 519 WP_010461897.1 DUF2062 domain-containing protein -
  ACK3BE_RS07860 (ACK3BE_07860) comA 1748804..1751038 (+) 2235 WP_411960567.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACK3BE_RS07865 (ACK3BE_07865) exbB 1751137..1751772 (+) 636 WP_010461893.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK3BE_RS07870 (ACK3BE_07870) - 1751769..1752200 (+) 432 WP_010461891.1 ExbD/TolR family protein -
  ACK3BE_RS07875 (ACK3BE_07875) lpxK 1752200..1753210 (+) 1011 WP_077748005.1 tetraacyldisaccharide 4'-kinase -
  ACK3BE_RS07880 (ACK3BE_07880) - 1753236..1753421 (+) 186 WP_010461887.1 Trm112 family protein -
  ACK3BE_RS07885 (ACK3BE_07885) kdsB 1753418..1754182 (+) 765 WP_282410788.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK3BE_RS07890 (ACK3BE_07890) - 1754182..1754646 (+) 465 WP_010461884.1 low molecular weight protein-tyrosine-phosphatase -
  ACK3BE_RS07895 (ACK3BE_07895) murB 1754643..1755662 (+) 1020 WP_411960568.1 UDP-N-acetylmuramate dehydrogenase -
  ACK3BE_RS07900 (ACK3BE_07900) - 1755908..1756378 (+) 471 WP_172792422.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22883.09 Da        Isoelectric Point: 6.8770

>NTDB_id=1086328 ACK3BE_RS07865 WP_010461893.1 1751137..1751772(+) (exbB) [Pseudomonas mandelii strain VR4' HT30-3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVVHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1086328 ACK3BE_RS07865 WP_010461893.1 1751137..1751772(+) (exbB) [Pseudomonas mandelii strain VR4' HT30-3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCAATGGCGATCGTCGC
CGAGCGTCTCTGGACCCTGCGAGCCAGCCGTGTGACCCCTGAGCATTTGCTCGGGCAGGTCTGGGTGTGGATCAAGGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCACCGTTGGGCGAGATCCTGGCAGCGGGCCTTGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCACGGGTGGTTCATGAACTCGAACGCTATAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCATTGCTGGGCCTGTTGGGTACGGTGCTGGGCATGATCGACATTTTCA
GCGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCGGTGCTGGCGGGCGGTATCTCCAAGGCGCTGATCACTACGGCC
GCTGGCCTGATGGTCGGTATCCCGGCAGTATTCTTTCACCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAACTGGTCGAAGTGGTTCAGGGCGACCGTGATGTGGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A024E8F0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.256

100

0.863

Multiple sequence alignment