Detailed information NTG1086327

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: ACK3BE_RS07860
• Genome accession: NZ_CP177237
• Coordinates: 1748804..1751038 (+)
• Length: 744 a.a.
• NCBI ID: WP_411960567.1
• Uniprot ID: -
• Organism: Pseudomonas mandelii strain VR4' HT30-3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1743804..1756038

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACK3BE_RS07835 (ACK3BE_07835)	-	1744831..1745490 (+)	660	WP_411960566.1	transglutaminase-like domain-containing protein	-
ACK3BE_RS07840 (ACK3BE_07840)	-	1745534..1746157 (+)	624	WP_221108726.1	glutathione S-transferase family protein	-
ACK3BE_RS07845 (ACK3BE_07845)	-	1746300..1747232 (+)	933	WP_010461902.1	ABC transporter ATP-binding protein	-
ACK3BE_RS07850 (ACK3BE_07850)	-	1747229..1748008 (+)	780	WP_010461900.1	ABC transporter permease	-
ACK3BE_RS07855 (ACK3BE_07855)	-	1748150..1748668 (-)	519	WP_010461897.1	DUF2062 domain-containing protein	-
ACK3BE_RS07860 (ACK3BE_07860)	comA	1748804..1751038 (+)	2235	WP_411960567.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
ACK3BE_RS07865 (ACK3BE_07865)	exbB	1751137..1751772 (+)	636	WP_010461893.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
ACK3BE_RS07870 (ACK3BE_07870)	-	1751769..1752200 (+)	432	WP_010461891.1	ExbD/TolR family protein	-
ACK3BE_RS07875 (ACK3BE_07875)	lpxK	1752200..1753210 (+)	1011	WP_077748005.1	tetraacyldisaccharide 4'-kinase	-
ACK3BE_RS07880 (ACK3BE_07880)	-	1753236..1753421 (+)	186	WP_010461887.1	Trm112 family protein	-
ACK3BE_RS07885 (ACK3BE_07885)	kdsB	1753418..1754182 (+)	765	WP_282410788.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
ACK3BE_RS07890 (ACK3BE_07890)	-	1754182..1754646 (+)	465	WP_010461884.1	low molecular weight protein-tyrosine-phosphatase	-
ACK3BE_RS07895 (ACK3BE_07895)	murB	1754643..1755662 (+)	1020	WP_411960568.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81524.82 Da
• Isoelectric Point: 10.1819

>NTDB_id=1086327 ACK3BE_RS07860 WP_411960567.1 1748804..1751038(+) (comA) [Pseudomonas mandelii strain VR4' HT30-3]
MRTGMMALALGLLALRFLPVLPPVWLWMLLPVVGLMLLPFRTHPLAFFLFGFSWACASAQWALDDRLSLTLDGETRWVEG
RVTGLPQNAEGVVRFELTDSQSRSTRLPRHLRLAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGHRLAAAQWAWRDSIRQQLQAVDAQGRTGALIALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPSRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMISLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLILGLPISVSGPVANLLAVPWVSLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLVDLLFKGLALMAGRFPAWVPVAVPVWIWALGTLGAFLLLLPKGVPLRPLGWPLLLLLV
FPPRPMLAEGVAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGEFDLGERVVLPSLRKLGVSGIDLMLLSHADADHAGGA
RAVANGLPVARVLSGDPEALPAELRAEGCESGRQWTWDGVDFRLWQWTSAADSNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDSPLAVPTDWLQSPHHGSRSSSSMALLAALQPKAVLISRGQGNSFGHPHPTVMARYQKRGMAIYDSATHGAIRLQL
GRFKPPWTMRLDRRFWRDPPPLGP

Nucleotide

• Length: 2235 bp

>NTDB_id=1086327 ACK3BE_RS07860 WP_411960567.1 1748804..1751038(+) (comA) [Pseudomonas mandelii strain VR4' HT30-3]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTTTGCTGGCCCTGCGTTTTTTACCGGTTTTACCGCCGGTCTGGTTATG
GATGTTGCTGCCGGTCGTGGGTTTGATGCTGTTGCCGTTTCGGACTCACCCGTTGGCGTTTTTTCTGTTCGGCTTCAGTT
GGGCGTGCGCGAGTGCGCAGTGGGCGCTGGATGATCGCCTGTCGCTGACGCTCGATGGCGAGACTCGTTGGGTCGAAGGT
CGGGTGACGGGCCTGCCGCAGAATGCCGAAGGGGTGGTGCGCTTCGAGTTGACCGACAGTCAGTCCCGAAGCACCCGGCT
GCCCCGGCATCTGCGCCTCGCCTGGTATGACGGACCGCCCGTCAACAGCGGCGAACGGTGGCGGCTGGCGGTCAAGTTGA
AGCGTCCTGCCGGGCTGCTCAATCCGCATGCCTTTGACTACGACGCCTGGTTGCTGGCACAACGCATCGGCGCTACCGGT
ACGGTCAAGGATGGCCATAGGCTGGCCGCCGCCCAATGGGCCTGGCGTGACAGCATTCGGCAGCAATTGCAGGCCGTCGA
TGCCCAAGGCCGGACGGGGGCGCTGATCGCATTGGTGTTGGGCGACGGCGGCGGGCTGAGTCGCGAGGACTGGCAAGTGC
TGCAAGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGGCAGCACATCGGGTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGTCTGTGGCCGAGCCGTTTGCCCTGGCTGCCATGGGCCTGCGGACTGGCGTTTGCCGC
TGCGCTGGGTTACGGGTTGCTGGCCGGTTTTGAGGTGCCGGTGCGCCGGGCCTGCGTGATGATCAGTCTGGTGTTGTTGT
GGCGGCTAAGGTTTCGGCACCTTGGCGCCTGGTGGCCGCTGTTGCTGGCGCTCAATGGCGTTTTACTGCTCGACCCGCTG
GCGAGCCTGCAACCGGGGTTCTGGTTGTCCTTCGCAGCGGTGGCGGTGTTGATCTTCACTTTCGGTGGGCGTCTGGGGCC
GTGGCGTTGGTGGCAAACGTGGACCCGTGCGCAATGGCTGATCGCGATCGGACTGTGCCCATTGCTATTGATACTTGGCT
TGCCGATCAGCGTCAGCGGACCAGTGGCCAATTTGCTGGCGGTGCCTTGGGTCAGTCTGGTGGTATTGCCGCCAGCCTTG
CTCGGGACGTTGTTACTGCCCGTCCCTTATGTGGGCGAGGGGTTGCTGTGGCTGGCGGGCGGTCTGGTCGACCTGCTGTT
CAAGGGGCTGGCATTGATGGCCGGGCGATTCCCCGCCTGGGTGCCGGTCGCGGTGCCGGTGTGGATTTGGGCGCTCGGTA
CGCTGGGGGCCTTTCTTCTATTACTGCCTAAGGGGGTGCCGTTGCGCCCGTTGGGTTGGCCGCTGCTGCTGTTACTGGTT
TTTCCACCTCGCCCGATGCTTGCCGAAGGCGTCGCCGAAGTCTGGCAGCTGGACGTCGGCCAGGGCCTGGCCATCCTGGT
GCGCACCCGCCATCACACCTTGTTGTATGACGCCGGGCCGCGTTTTGGCGAATTCGACCTCGGCGAGCGAGTGGTGCTGC
CGTCATTGCGCAAACTGGGCGTGTCCGGGATCGACCTGATGCTGCTCAGTCACGCCGACGCCGATCACGCCGGCGGTGCA
CGTGCGGTTGCCAACGGATTGCCGGTGGCGCGGGTCCTGAGCGGTGATCCCGAGGCGCTGCCAGCCGAATTGCGCGCCGA
AGGCTGTGAAAGCGGCCGGCAATGGACCTGGGACGGTGTGGACTTCCGTCTCTGGCAATGGACATCCGCCGCCGACAGCA
ATCAAAAATCCTGTGTCTTGCAGATCGAAGCCAATGGCGAGCGATTGTTGCTGACCGGTGATATTGATGCGGCAGCCGAG
CGGGCATTGCTCGACAGTCCGCTTGCCGTGCCGACCGATTGGCTGCAATCGCCTCACCACGGCAGTCGCAGTTCCTCTTC
GATGGCGCTGCTCGCCGCGTTGCAACCCAAGGCTGTGCTGATATCCCGTGGCCAGGGCAATTCCTTTGGCCACCCGCATC
CCACGGTCATGGCGCGCTATCAAAAACGCGGCATGGCGATCTACGACAGCGCCACCCACGGCGCCATTCGTCTGCAACTG
GGACGGTTCAAGCCGCCATGGACGATGCGTCTGGATCGGCGTTTCTGGCGCGATCCGCCACCGTTGGGCCCATAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

• Domain of unknown function (DUF4131) (DUF4131) (23-166)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.687	96.237	0.613
comA	Ralstonia pseudosolanacearum GMI1000	33.495	100	0.371