Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJWMD_RS08950 Genome accession   NZ_CP177182
Coordinates   1888020..1888538 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain MRD6060     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1883020..1893538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS08930 - 1884940..1885884 (+) 945 WP_004183470.1 magnesium transporter CorA family protein -
  ACJWMD_RS08935 - 1885953..1886624 (+) 672 WP_004183471.1 DUF1129 domain-containing protein -
  ACJWMD_RS08940 - 1886735..1887616 (+) 882 WP_004183473.1 DUF4300 family protein -
  ACJWMD_RS08945 rpsR 1887739..1887978 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  ACJWMD_RS08950 ssb 1888020..1888538 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  ACJWMD_RS08955 rpsF 1888550..1888840 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  ACJWMD_RS08960 - 1889041..1889994 (+) 954 WP_004183517.1 hypothetical protein -
  ACJWMD_RS08965 mutY 1890879..1892030 (+) 1152 WP_004183519.1 A/G-specific adenine glycosylase -
  ACJWMD_RS08970 - 1892609..1893010 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=1086031 ACJWMD_RS08950 WP_002891844.1 1888020..1888538(-) (ssb) [Streptococcus salivarius strain MRD6060]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1086031 ACJWMD_RS08950 WP_002891844.1 1888020..1888538(-) (ssb) [Streptococcus salivarius strain MRD6060]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment