Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   ACJWMD_RS08200 Genome accession   NZ_CP177182
Coordinates   1740368..1741405 (-) Length   345 a.a.
NCBI ID   WP_004183264.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1735368..1746405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS08175 ilvD 1735639..1737357 (-) 1719 WP_170314552.1 dihydroxy-acid dehydratase -
  ACJWMD_RS08180 - 1737470..1738651 (+) 1182 WP_004183260.1 NAD(P)/FAD-dependent oxidoreductase -
  ACJWMD_RS08190 trmB 1738868..1739509 (-) 642 WP_004183261.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACJWMD_RS08195 ccrZ 1739519..1740310 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  ACJWMD_RS08200 pptB 1740368..1741405 (-) 1038 WP_004183264.1 ABC transporter permease Regulator
  ACJWMD_RS08205 pptA 1741402..1742133 (-) 732 WP_004183266.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS08210 - 1742198..1742617 (+) 420 WP_004183267.1 HIT family protein -
  ACJWMD_RS08215 - 1742614..1742913 (+) 300 WP_004183269.1 hypothetical protein -
  ACJWMD_RS08220 - 1743380..1743745 (-) 366 WP_156209922.1 hypothetical protein -
  ACJWMD_RS08225 - 1743838..1744446 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  ACJWMD_RS08230 - 1744464..1744589 (-) 126 WP_002884447.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40070.67 Da        Isoelectric Point: 10.6255

>NTDB_id=1086026 ACJWMD_RS08200 WP_004183264.1 1740368..1741405(-) (pptB) [Streptococcus salivarius strain MRD6060]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALRLPVWGVILVGVAMAILKYVIFQKKAQPFYKQS
GLNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVINLKRLISQIVLVLTMVQAVCLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1086026 ACJWMD_RS08200 WP_004183264.1 1740368..1741405(-) (pptB) [Streptococcus salivarius strain MRD6060]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAA
ATCCGTGGGCAATCATTCTTGGCCTGCTTGTGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAA
CCTGCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACAGGACGTGCTTTTAG
ATTTTGGGTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGAGACTTCCAGTTTGGGGAG
TTATCCTTGTAGGTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAGAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAAA
ATACCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTTTTTGCCCTA
ACGCTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACAGCACTAAAATCACACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAA
TCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGTACTGACTATGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(4-160)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

96.512

99.71

0.962
  pptB Streptococcus thermophilus LMD-9

91.279

99.71

0.91

Multiple sequence alignment