Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACJWMD_RS08205 Genome accession   NZ_CP177182
Coordinates   1741402..1742133 (-) Length   243 a.a.
NCBI ID   WP_004183266.1    Uniprot ID   -
Organism   Streptococcus salivarius strain MRD6060     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1736402..1747133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJWMD_RS08180 - 1737470..1738651 (+) 1182 WP_004183260.1 NAD(P)/FAD-dependent oxidoreductase -
  ACJWMD_RS08190 trmB 1738868..1739509 (-) 642 WP_004183261.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACJWMD_RS08195 ccrZ 1739519..1740310 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  ACJWMD_RS08200 pptB 1740368..1741405 (-) 1038 WP_004183264.1 ABC transporter permease Regulator
  ACJWMD_RS08205 pptA 1741402..1742133 (-) 732 WP_004183266.1 ABC transporter ATP-binding protein Regulator
  ACJWMD_RS08210 - 1742198..1742617 (+) 420 WP_004183267.1 HIT family protein -
  ACJWMD_RS08215 - 1742614..1742913 (+) 300 WP_004183269.1 hypothetical protein -
  ACJWMD_RS08220 - 1743380..1743745 (-) 366 WP_156209922.1 hypothetical protein -
  ACJWMD_RS08225 - 1743838..1744446 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  ACJWMD_RS08230 - 1744464..1744589 (-) 126 WP_002884447.1 hypothetical protein -
  ACJWMD_RS08235 - 1745026..1747131 (-) 2106 WP_004183275.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26723.96 Da        Isoelectric Point: 4.4230

>NTDB_id=1086027 ACJWMD_RS08205 WP_004183266.1 1741402..1742133(-) (pptA) [Streptococcus salivarius strain MRD6060]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVGPSLLIVDEPF
LGLDPLAISDLIELLAEEKANGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRETFGDSSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1086027 ACJWMD_RS08205 WP_004183266.1 1741402..1742133(-) (pptA) [Streptococcus salivarius strain MRD6060]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCTATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTTGGTCCAAGTCTTCTCATTGTTGATGAGCCCTTC
CTAGGTTTGGATCCCTTGGCGATTTCGGACTTGATTGAGCTTTTGGCTGAGGAAAAAGCGAATGGTAAGGCTATTCTCAT
GTCGACTCACGTTTTGGATTCGGCTGAGAAAATGTGTGACCGTTTTGTCATCTTGCATCACGGTCAAGTCTTGGCACAGG
GGACCCTTGAAGAGCTTCGTGAGACATTTGGTGACAGTAGTGCCAGTCTTAACGATATTTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

97.531

100

0.975
  pptA Streptococcus thermophilus LMD-9

97.119

100

0.971

Multiple sequence alignment