Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACJVG6_RS09330 Genome accession   NZ_CP177180
Coordinates   1977138..1979108 (-) Length   656 a.a.
NCBI ID   WP_002886978.1    Uniprot ID   J7TG40
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1972138..1984108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS09315 - 1972742..1973632 (-) 891 WP_002886972.1 hypothetical protein -
  ACJVG6_RS09320 - 1973687..1974994 (-) 1308 WP_002886973.1 GHKL domain-containing protein -
  ACJVG6_RS09325 gltX 1975447..1976901 (-) 1455 WP_002886976.1 glutamate--tRNA ligase -
  ACJVG6_RS09330 amiA 1977138..1979108 (-) 1971 WP_002886978.1 peptide ABC transporter substrate-binding protein Regulator
  ACJVG6_RS09335 rplA 1979290..1979979 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  ACJVG6_RS09340 rplK 1980079..1980504 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  ACJVG6_RS09345 - 1980676..1981029 (+) 354 WP_002885872.1 DUF3397 domain-containing protein -
  ACJVG6_RS09350 - 1981124..1981621 (-) 498 WP_002886981.1 beta-class carbonic anhydrase -
  ACJVG6_RS09355 - 1981772..1982467 (-) 696 WP_002885783.1 TIGR00266 family protein -
  ACJVG6_RS09360 radA 1982544..1983905 (-) 1362 WP_080562498.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72993.80 Da        Isoelectric Point: 4.9590

>NTDB_id=1085894 ACJVG6_RS09330 WP_002886978.1 1977138..1979108(-) (amiA) [Streptococcus salivarius strain MRD-KRBY]
MKKSKVFLLAAVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGIKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNGEFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYGHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPSYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVISRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=1085894 ACJVG6_RS09330 WP_002886978.1 1977138..1979108(-) (amiA) [Streptococcus salivarius strain MRD-KRBY]
ATGAAAAAGAGTAAGGTATTTTTACTGGCAGCCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTCTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ATATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATACGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACCTATACTTACAAGATTCGTAAGGGTATCAAATGGTACACTTCAGACGG
CGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTGACAGGACTTAAGCATGCTGCGGATACAAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTTTCAAATGTAGGTATCAAG
GCTGTTGATGATTACACCTTGCAATATACGCTTAGTCAACCAGAACCTTATTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGGAGAATTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGATCCGACTTCTATTCTCTATA
ACGGTCCATACCTTCTTAAATCTTTGACAACGAAATCATCTATTGAGTTCACCAAGAATGAAAACTATTGGGATAAGGAT
AATGTCTACTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACAGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGTTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGGTCATACATCTAAAGAAAAT
GACCAGCAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCTATTGACCGTAC
GAATTATGCTGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAAGATTTCGGAACTATGGTAATGGATCAATTACCAAGCTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCTAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTTTACAAT
ATTACTTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGACTTGTCAGTGGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTCTTGAAGACTACAAATAGCGAAAATACTAAGTCCTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTAAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACA
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAATTTCTCGTATTAAGCCATTCTCAGGAGCATATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTAACTAAGAAACAATACGACTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TG40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.665

100

0.697
  amiA3 Streptococcus thermophilus LMD-9

68.493

100

0.686
  amiA3 Streptococcus thermophilus LMG 18311

67.732

100

0.678

Multiple sequence alignment