Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJVG6_RS08925 Genome accession   NZ_CP177180
Coordinates   1890050..1890568 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain MRD-KRBY     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1885050..1895568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVG6_RS08905 - 1886970..1887914 (+) 945 WP_004183470.1 magnesium transporter CorA family protein -
  ACJVG6_RS08910 - 1887983..1888654 (+) 672 WP_004183471.1 DUF1129 domain-containing protein -
  ACJVG6_RS08915 - 1888765..1889646 (+) 882 WP_004183473.1 DUF4300 family protein -
  ACJVG6_RS08920 rpsR 1889769..1890008 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  ACJVG6_RS08925 ssb 1890050..1890568 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  ACJVG6_RS08930 rpsF 1890580..1890870 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  ACJVG6_RS08935 - 1891071..1892024 (+) 954 WP_004183517.1 hypothetical protein -
  ACJVG6_RS08940 mutY 1892909..1894060 (+) 1152 WP_004183519.1 A/G-specific adenine glycosylase -
  ACJVG6_RS08945 - 1894639..1895040 (-) 402 WP_004183523.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=1085893 ACJVG6_RS08925 WP_002891844.1 1890050..1890568(-) (ssb) [Streptococcus salivarius strain MRD-KRBY]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1085893 ACJVG6_RS08925 WP_002891844.1 1890050..1890568(-) (ssb) [Streptococcus salivarius strain MRD-KRBY]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment