Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACJVC4_RS09055 Genome accession   NZ_CP177179
Coordinates   1947862..1948380 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1942862..1953380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS09035 - 1944775..1945719 (+) 945 WP_004183470.1 magnesium transporter CorA family protein -
  ACJVC4_RS09040 - 1945788..1946459 (+) 672 WP_002891841.1 DUF1129 domain-containing protein -
  ACJVC4_RS09045 - 1946576..1947457 (+) 882 WP_002891843.1 DUF4300 family protein -
  ACJVC4_RS09050 rpsR 1947581..1947820 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  ACJVC4_RS09055 ssb 1947862..1948380 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  ACJVC4_RS09060 rpsF 1948392..1948682 (-) 291 WP_003093185.1 30S ribosomal protein S6 -
  ACJVC4_RS09065 - 1948886..1949839 (+) 954 WP_002891848.1 hypothetical protein -
  ACJVC4_RS09070 mutY 1951016..1952167 (+) 1152 WP_002891850.1 A/G-specific adenine glycosylase -
  ACJVC4_RS09075 - 1952189..1952314 (-) 126 WP_002891852.1 hypothetical protein -
  ACJVC4_RS09080 - 1952464..1952724 (-) 261 WP_002891854.1 hypothetical protein -
  ACJVC4_RS09085 - 1952745..1953146 (-) 402 WP_002891858.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=1085824 ACJVC4_RS09055 WP_002891844.1 1947862..1948380(-) (ssb) [Streptococcus salivarius strain MRD-NRLLH]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1085824 ACJVC4_RS09055 WP_002891844.1 1947862..1948380(-) (ssb) [Streptococcus salivarius strain MRD-NRLLH]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGCAACGTTGCTGTTGC
AACATTTAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACAGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGATGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36

Multiple sequence alignment