Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   ACJVC4_RS02200 Genome accession   NZ_CP177179
Coordinates   423565..424008 (+) Length   147 a.a.
NCBI ID   WP_002890101.1    Uniprot ID   J7TQ97
Organism   Streptococcus salivarius strain MRD-NRLLH     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 418565..429008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACJVC4_RS02185 gdhA 419632..420984 (+) 1353 WP_037597452.1 NADP-specific glutamate dehydrogenase -
  ACJVC4_RS02190 - 421271..422812 (+) 1542 WP_080583687.1 hypothetical protein -
  ACJVC4_RS02195 - 422968..423378 (+) 411 WP_002890100.1 peptide deformylase -
  ACJVC4_RS02200 rcrR 423565..424008 (+) 444 WP_002890101.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  ACJVC4_RS02205 rcrP 424012..425826 (+) 1815 WP_002890102.1 ABC transporter ATP-binding protein Regulator
  ACJVC4_RS02210 rcrQ 425816..427594 (+) 1779 WP_002890103.1 ABC transporter ATP-binding protein Regulator
  ACJVC4_RS02215 - 427702..428325 (+) 624 WP_002890105.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17069.51 Da        Isoelectric Point: 9.6395

>NTDB_id=1085788 ACJVC4_RS02200 WP_002890101.1 423565..424008(+) (rcrR) [Streptococcus salivarius strain MRD-NRLLH]
MHGKDPFSDFREIINAMESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAKDVGHFREAIHEQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=1085788 ACJVC4_RS02200 WP_002890101.1 423565..424008(+) (rcrR) [Streptococcus salivarius strain MRD-NRLLH]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAAATCATCAATGCTATGGAATCTCGCGTGCAAGAGTTAGGGAAGGT
CCACGGTGTTGAACATTTAGCCGGCCCACAAGGATTTGCTGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATCGAGAAAAGACTATCTATTTCCAAGTCTGTGGCTAGTAATCTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCAAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTGTTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCCTTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J7TQ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558

Multiple sequence alignment