Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLIMF_RS06760 Genome accession   NZ_CP177047
Coordinates   1483957..1486167 (+) Length   736 a.a.
NCBI ID   WP_411564488.1    Uniprot ID   -
Organism   Pseudomonas shirazensis strain MPB13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1478957..1491167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMF_RS06740 (ACLIMF_06740) - 1480828..1481451 (+) 624 WP_411564486.1 glutathione S-transferase -
  ACLIMF_RS06745 (ACLIMF_06745) - 1481596..1482528 (+) 933 WP_411564487.1 ABC transporter ATP-binding protein -
  ACLIMF_RS06750 (ACLIMF_06750) - 1482525..1483304 (+) 780 WP_101321513.1 ABC transporter permease -
  ACLIMF_RS06755 (ACLIMF_06755) - 1483188..1483814 (-) 627 WP_150570139.1 DUF2062 domain-containing protein -
  ACLIMF_RS06760 (ACLIMF_06760) comA 1483957..1486167 (+) 2211 WP_411564488.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLIMF_RS06765 (ACLIMF_06765) exbB 1486258..1486893 (+) 636 WP_060481604.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLIMF_RS06770 (ACLIMF_06770) - 1486890..1487324 (+) 435 WP_060481531.1 ExbD/TolR family protein -
  ACLIMF_RS06775 (ACLIMF_06775) lpxK 1487324..1488331 (+) 1008 WP_411564489.1 tetraacyldisaccharide 4'-kinase -
  ACLIMF_RS06780 (ACLIMF_06780) - 1488374..1488559 (+) 186 WP_028633616.1 Trm112 family protein -
  ACLIMF_RS06785 (ACLIMF_06785) kdsB 1488556..1489320 (+) 765 WP_103438133.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLIMF_RS06790 (ACLIMF_06790) - 1489320..1489784 (+) 465 WP_103438132.1 low molecular weight protein-tyrosine-phosphatase -
  ACLIMF_RS06795 (ACLIMF_06795) murB 1489781..1490800 (+) 1020 WP_411564490.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 736 a.a.        Molecular weight: 79671.31 Da        Isoelectric Point: 9.5927

>NTDB_id=1085293 ACLIMF_RS06760 WP_411564488.1 1483957..1486167(+) (comA) [Pseudomonas shirazensis strain MPB13]
MRTGMLALALGLLCLGFLPVLPTVGWLVVMLLAALGCLATRVWPLGCLLLGFCWACWSAQQALDDRLAHSLDGRTLWLEG
RVVGLPAVSAHGVRFELEEPASRRAELPRRLQLSWFDGPEIRAGERWRLAVTLKRPRGLLNPHGPDREATLLARRIGATG
TVKAGELLEPVAGGWRDSLRQRLLAVDAWGREAALAALVLGDGSGLARQDWHTLQATGTVHLLVISGQHIGLVAGLVYGL
VAGLARYGGWPRRWPWLPWACGLAMTAALGYGWLAGFGVPVQRACLMLAVVLLWRLRFRQLSAFVPLLMALCGVLLVEPL
ASLLPGFWLSFGAVAVLIYCFAQRLGGWRPWQAWTRAQWVIAIGLLPAMLALGLPISLSAPLANLLAVPWISLVVLPLAL
LGTLFLPLAGFGGLLLWLAGAALAGLFDVLTVAAQWQPAWIARQLPLLAWLLVLSGALIVLLPRGVPMRGLGALMLLALW
VPGKSLPQGQVEVLQLDVGQGLAILLRTRNHSLLYDAGPARGESDLGESVVLPTLRKLGVDQLDVLLISHAHADHAGGAA
AVQRGLSVERVVVGESEQAFQAQSCETGQGWQWDGVDFSLWHWPQGRSSNDRSCVLLVEAQGERLLLAGDIEASAERAWL
AAHEGKRIDWLQSPHHGSRSSSTEAFIAATRPRGVLISRGAHNGFGHPHVQVLERYQRHGLAIHDTAIEGALSLRLGAQS
QVAGQRAQRRFWRDKE

Nucleotide


Download         Length: 2211 bp        

>NTDB_id=1085293 ACLIMF_RS06760 WP_411564488.1 1483957..1486167(+) (comA) [Pseudomonas shirazensis strain MPB13]
ATGCGCACAGGGATGTTAGCGCTTGCGCTCGGGCTGTTGTGCCTGGGCTTTCTACCCGTTCTGCCGACGGTCGGCTGGCT
AGTCGTGATGCTGCTCGCTGCGCTTGGCTGCCTGGCTACGCGAGTCTGGCCGCTGGGCTGCTTGCTACTGGGCTTTTGCT
GGGCGTGCTGGTCGGCGCAGCAGGCGCTGGATGATCGTCTGGCGCATTCGCTCGATGGCCGCACGCTATGGCTTGAGGGG
CGCGTGGTCGGCCTGCCAGCGGTATCGGCCCACGGTGTGCGCTTCGAGCTGGAAGAACCCGCTTCGCGCCGCGCCGAATT
ACCCAGGCGCTTGCAACTGAGCTGGTTCGACGGCCCAGAAATTCGTGCCGGAGAGCGCTGGCGCCTGGCCGTGACCCTGA
AACGCCCGCGCGGCTTGCTCAATCCACATGGGCCGGATCGCGAGGCGACGCTGTTGGCCCGGCGCATCGGCGCCACTGGC
ACGGTCAAGGCGGGAGAGTTGCTGGAGCCGGTGGCCGGCGGCTGGCGCGACAGTCTGCGCCAGCGCCTGCTGGCAGTGGA
TGCCTGGGGCCGCGAAGCGGCGTTGGCGGCGCTGGTACTGGGCGATGGCTCGGGGCTGGCCAGGCAAGACTGGCACACGC
TGCAGGCGACCGGCACGGTGCACTTGTTGGTCATCTCGGGCCAACACATCGGGTTGGTCGCAGGGTTGGTCTACGGCCTG
GTGGCGGGGCTGGCACGTTACGGAGGTTGGCCGCGGCGCTGGCCATGGCTGCCGTGGGCGTGCGGGCTGGCCATGACGGC
TGCGCTGGGCTACGGCTGGCTGGCCGGGTTTGGCGTGCCGGTGCAGCGGGCCTGTCTGATGCTGGCGGTGGTGCTGCTCT
GGCGCCTGCGTTTTCGTCAATTGAGCGCCTTTGTACCACTGTTGATGGCGCTGTGCGGTGTGCTGCTGGTTGAGCCGTTG
GCCAGTTTGCTGCCCGGATTCTGGTTGTCGTTCGGCGCGGTGGCAGTGCTGATCTACTGCTTTGCCCAGCGTCTTGGCGG
TTGGCGGCCTTGGCAAGCGTGGACGCGTGCGCAGTGGGTGATCGCCATCGGCTTGTTGCCGGCGATGCTGGCGCTGGGCC
TGCCGATCAGTCTGAGCGCGCCGTTGGCTAATCTGCTCGCGGTGCCCTGGATCAGCTTGGTGGTGCTGCCGTTGGCGTTG
CTGGGCACCTTGTTTCTGCCGCTGGCGGGGTTTGGCGGACTGCTGCTATGGCTGGCCGGCGCAGCGCTGGCTGGGTTGTT
CGACGTGCTGACGGTGGCAGCTCAGTGGCAACCGGCATGGATTGCCCGGCAGTTGCCGCTACTGGCCTGGTTGCTGGTGC
TCAGTGGCGCGTTGATCGTGTTGCTGCCCCGGGGCGTACCCATGCGTGGCCTGGGCGCGCTGATGCTGCTGGCGCTGTGG
GTGCCTGGCAAGTCGTTGCCGCAGGGGCAGGTCGAGGTGCTGCAGCTGGACGTCGGCCAGGGCCTGGCGATCCTTCTGCG
CACGCGGAACCACAGCCTGCTCTACGATGCTGGCCCAGCGCGCGGCGAGAGCGATCTGGGCGAAAGTGTAGTGCTGCCCA
CTTTGCGTAAACTGGGCGTCGATCAACTGGATGTGCTGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGCGCAGCG
GCCGTGCAGCGCGGCCTGTCGGTCGAGCGCGTTGTGGTCGGTGAGTCGGAGCAGGCCTTCCAGGCACAAAGCTGCGAGAC
GGGGCAGGGCTGGCAGTGGGACGGTGTCGACTTTTCACTCTGGCATTGGCCGCAGGGGCGCTCGAGCAATGACCGCTCCT
GCGTATTGCTGGTCGAGGCGCAGGGCGAGCGTCTGCTGTTGGCCGGTGACATTGAAGCCAGCGCCGAACGCGCCTGGCTG
GCGGCGCATGAAGGCAAACGCATCGACTGGCTGCAGTCACCGCACCACGGCAGTCGCAGTTCCTCCACCGAGGCGTTCAT
TGCTGCCACCAGGCCGCGCGGTGTATTGATTTCCCGCGGTGCGCACAACGGTTTCGGCCACCCGCATGTGCAGGTGCTGG
AACGCTACCAGCGCCATGGGCTGGCGATTCACGACACCGCCATAGAGGGCGCCTTGAGCTTGCGCCTGGGCGCTCAATCC
CAGGTTGCCGGGCAGCGTGCCCAGCGCAGGTTCTGGCGTGACAAAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.722

97.826

0.584
  comA Ralstonia pseudosolanacearum GMI1000

34.655

100

0.368

Multiple sequence alignment