Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLIMF_RS06765 Genome accession   NZ_CP177047
Coordinates   1486258..1486893 (+) Length   211 a.a.
NCBI ID   WP_060481604.1    Uniprot ID   A0A2K9CGI7
Organism   Pseudomonas shirazensis strain MPB13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1481258..1491893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMF_RS06745 (ACLIMF_06745) - 1481596..1482528 (+) 933 WP_411564487.1 ABC transporter ATP-binding protein -
  ACLIMF_RS06750 (ACLIMF_06750) - 1482525..1483304 (+) 780 WP_101321513.1 ABC transporter permease -
  ACLIMF_RS06755 (ACLIMF_06755) - 1483188..1483814 (-) 627 WP_150570139.1 DUF2062 domain-containing protein -
  ACLIMF_RS06760 (ACLIMF_06760) comA 1483957..1486167 (+) 2211 WP_411564488.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLIMF_RS06765 (ACLIMF_06765) exbB 1486258..1486893 (+) 636 WP_060481604.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLIMF_RS06770 (ACLIMF_06770) - 1486890..1487324 (+) 435 WP_060481531.1 ExbD/TolR family protein -
  ACLIMF_RS06775 (ACLIMF_06775) lpxK 1487324..1488331 (+) 1008 WP_411564489.1 tetraacyldisaccharide 4'-kinase -
  ACLIMF_RS06780 (ACLIMF_06780) - 1488374..1488559 (+) 186 WP_028633616.1 Trm112 family protein -
  ACLIMF_RS06785 (ACLIMF_06785) kdsB 1488556..1489320 (+) 765 WP_103438133.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLIMF_RS06790 (ACLIMF_06790) - 1489320..1489784 (+) 465 WP_103438132.1 low molecular weight protein-tyrosine-phosphatase -
  ACLIMF_RS06795 (ACLIMF_06795) murB 1489781..1490800 (+) 1020 WP_411564490.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22933.25 Da        Isoelectric Point: 7.3616

>NTDB_id=1085294 ACLIMF_RS06765 WP_060481604.1 1486258..1486893(+) (exbB) [Pseudomonas shirazensis strain MPB13]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKSLRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANASVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVVQGDREVEVAGVKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1085294 ACLIMF_RS06765 WP_060481604.1 1486258..1486893(+) (exbB) [Pseudomonas shirazensis strain MPB13]
GTGTGGGAATTGGTAAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGTCGCCATGGCTATCGTCGT
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTAACCCCGCCGCACCTGCTGGGTCAGGTGTGGATGTGGATCAAGGACA
AGCAGCTCACCAGTGACAAGCTCAAGAGCCTGCGCGCTGACTCGCCGCTGGGCGAGATCCTCGCTGCCGGCCTGGCCAAT
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATTGAAGAAGCCGCCTCGCGGGTTATTCACGAGCTCGAACGCTATAT
CAGCACGCTCGGCACCATCGCTGCGATGGCACCGCTGCTGGGTCTGCTCGGTACCGTGCTGGGCATGATCGACATCTTCA
GCGCATTCATGGGGTCGCAGATGACCGCCAACGCTTCGGTGCTCGCCGGTGGCATCTCCAAAGCCCTGGTGACCACGGCT
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGTCGCATCGACGAGTTGGTGGTCGGTAT
GGAGCAAGAGGCGATCAAGCTGGTCGAAGTCGTGCAAGGTGATCGCGAAGTGGAAGTGGCGGGAGTCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9CGI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment