Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLIMJ_RS13480 Genome accession   NZ_CP177034
Coordinates   2942256..2944469 (+) Length   737 a.a.
NCBI ID   WP_411220159.1    Uniprot ID   -
Organism   Pseudomonas veronii strain MPB10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2937256..2949469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMJ_RS13465 (ACLIMJ_13465) - 2939504..2940232 (+) 729 WP_126588667.1 response regulator transcription factor -
  ACLIMJ_RS13470 (ACLIMJ_13470) - 2940219..2941589 (+) 1371 WP_126588666.1 sensor histidine kinase -
  ACLIMJ_RS13475 (ACLIMJ_13475) - 2941593..2942108 (-) 516 WP_017848016.1 DUF2062 domain-containing protein -
  ACLIMJ_RS13480 (ACLIMJ_13480) comA 2942256..2944469 (+) 2214 WP_411220159.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLIMJ_RS13485 (ACLIMJ_13485) exbB 2944579..2945214 (+) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLIMJ_RS13490 (ACLIMJ_13490) - 2945211..2945639 (+) 429 WP_046382925.1 ExbD/TolR family protein -
  ACLIMJ_RS13495 (ACLIMJ_13495) lpxK 2945639..2946649 (+) 1011 WP_046382926.1 tetraacyldisaccharide 4'-kinase -
  ACLIMJ_RS13500 (ACLIMJ_13500) - 2946673..2946858 (+) 186 WP_003174668.1 Trm112 family protein -
  ACLIMJ_RS13505 (ACLIMJ_13505) kdsB 2946855..2947619 (+) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLIMJ_RS13510 (ACLIMJ_13510) - 2947619..2948083 (+) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  ACLIMJ_RS13515 (ACLIMJ_13515) murB 2948080..2949099 (+) 1020 WP_079444176.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 737 a.a.        Molecular weight: 79684.49 Da        Isoelectric Point: 10.2512

>NTDB_id=1084957 ACLIMJ_RS13480 WP_411220159.1 2942256..2944469(+) (comA) [Pseudomonas veronii strain MPB10]
MFALALGLLALRFLPALPPAGMLLALAVVALMLLPFRTYPLAFFLFGLCWACVSAQWALDDRLRPPLDGQTRWLEGRVSG
LPQQTDSGVRFELSDSRSRNARLPARIRLYWHGGPPVRSGERWRLAVTLKRPSGLLNFHGVDHEAWLLAQRIGATGSVKD
GERLAPARNAWRDAVRQRLMAVDAQGREAGLAALVLGDGSGLTADDWRVLQDTGTVHLLVISGQHIGLLAGLIYALVAAL
ARYGCWPRTWPWLPWACGLAFTAALGYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLAFNGVLILEPLASLQ
PGFWLSFAAVAVLGLTFGGRLGRWSAWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLFAVPWISLVVLPLALLGTA
LLAVPFVGAGLLWLAGGALDGLFNALALLAGQLPAWIPAGVPMGYWLVSLVGAVLLLLPKGVPIRLLGWPMLLLAVFPPR
EPVPHGQVDVLQLDVGQGLALILRTRHHTLLYDAGPRSGAVDLGARVVLPSLKRLGVDALDMMLLSHADADHAGGAAAVA
RGLPIKRVVGGETEGLPALLDTQPCISGEQWAWDGVSFELWQWPDAVDGNPKSCVLHVQANGERLLLTGDIDRAAEQAFL
ASTLAVPTDWLQAPHHGSRSSSSWPFLQRLAPKSVLISRGRGNAFGHPHPQVVERYQALGAQVYDSAEQGAVRLRLGAFA
PPIVARSQRRFWREALP

Nucleotide


Download         Length: 2214 bp        

>NTDB_id=1084957 ACLIMJ_RS13480 WP_411220159.1 2942256..2944469(+) (comA) [Pseudomonas veronii strain MPB10]
ATGTTCGCGCTTGCACTCGGGCTGCTTGCGCTGCGATTTCTACCCGCACTGCCGCCCGCCGGGATGCTGTTGGCGCTGGC
AGTGGTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTGTGTTGGGCATGTGTGA
GCGCGCAGTGGGCGCTGGATGACCGCTTGCGTCCGCCGCTCGACGGCCAGACGCGTTGGCTGGAGGGGCGTGTGAGCGGG
TTGCCGCAGCAGACTGACAGCGGCGTGCGTTTCGAACTGAGCGATAGCCGGTCGCGCAACGCCCGCTTGCCCGCGCGCAT
TCGGCTGTACTGGCACGGTGGCCCACCGGTACGCAGCGGTGAGCGTTGGCGCCTCGCGGTGACGCTTAAACGTCCGTCGG
GCCTGCTCAACTTCCATGGCGTCGACCATGAAGCCTGGCTGCTCGCCCAGCGCATCGGCGCCACCGGCTCGGTAAAGGAC
GGCGAACGCCTGGCGCCGGCCCGCAATGCTTGGCGCGACGCGGTCCGTCAGCGCTTGATGGCGGTGGACGCCCAAGGGCG
CGAGGCGGGGCTGGCGGCCCTGGTGCTGGGAGACGGCTCCGGGCTGACGGCCGACGACTGGCGTGTCTTGCAGGACACCG
GCACGGTGCATTTGCTGGTCATTTCCGGCCAGCACATTGGCCTGTTGGCGGGGTTGATCTATGCGCTCGTCGCCGCTCTG
GCGCGCTACGGCTGCTGGCCGCGCACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTACCGCGGCGTTGGGGTA
CGGCCTGCTGGCGGGGTTCGGCGTGCCGGTGCAGCGCGCCTGTGTAATGGTGGGGCTGGTGTTGCTGTGGCGTTTGCGTT
TCCGTCATCTGGGCATCTGGTGGCCGCTGTTGCTGGCGTTCAATGGTGTGCTGATCCTTGAACCCTTGGCCAGCTTGCAG
CCGGGGTTCTGGTTGTCCTTTGCGGCCGTGGCGGTACTGGGGCTGACGTTCGGCGGTCGGTTAGGCCGCTGGAGTGCTTG
GCAGGCATGGACCCGTCCGCAATGGTTGATAGCCATCGGTCTTTTCCCGGTGTTGCTGGTGCTGGGTTTGCCCATCAGCC
TCAGTGCGCCGCTGGCCAATCTATTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCCTGCTCGGGACGGCA
TTGCTGGCGGTGCCGTTCGTGGGCGCGGGCTTGTTGTGGCTGGCGGGTGGGGCGCTGGACGGCTTGTTCAACGCCCTGGC
GCTGCTGGCGGGGCAATTGCCTGCGTGGATACCGGCCGGGGTGCCCATGGGCTATTGGCTGGTTAGCCTGGTCGGTGCGG
TGTTGCTGTTGCTGCCCAAGGGTGTGCCGATTCGGCTGCTCGGCTGGCCGATGCTGTTGTTGGCGGTGTTCCCGCCGCGC
GAGCCGGTGCCCCACGGGCAGGTGGACGTACTGCAGCTGGATGTCGGGCAGGGGCTGGCGTTGATCCTGCGCACCCGCCA
TCACACCTTGCTCTACGATGCCGGCCCGCGCTCCGGGGCGGTCGATCTCGGCGCGCGGGTGGTGTTGCCGTCGCTGAAGA
GGCTCGGGGTAGACGCTCTGGACATGATGTTACTGAGCCATGCCGATGCCGATCATGCCGGCGGTGCGGCGGCTGTCGCC
CGTGGACTGCCGATCAAACGGGTCGTCGGTGGTGAAACCGAAGGGTTGCCGGCGCTTCTCGACACTCAGCCTTGTATCAG
CGGTGAACAATGGGCGTGGGACGGCGTGTCCTTTGAATTGTGGCAATGGCCAGACGCAGTTGATGGCAACCCCAAATCCT
GTGTATTGCACGTACAGGCCAATGGCGAGCGCCTGCTGCTCACCGGCGATATCGATCGCGCCGCCGAGCAGGCGTTTCTG
GCCTCGACCCTGGCGGTGCCGACCGATTGGCTGCAAGCCCCTCACCATGGTAGCCGCAGTTCGTCATCCTGGCCGTTTCT
GCAGCGGCTGGCGCCGAAGTCGGTGCTGATTTCCCGAGGGCGCGGCAATGCGTTCGGTCATCCTCATCCACAAGTGGTGG
AGCGCTATCAAGCGTTGGGAGCGCAGGTGTATGACAGCGCCGAACAGGGCGCGGTACGTTTGCGATTGGGCGCCTTCGCG
CCACCGATTGTTGCGCGCAGTCAACGCCGCTTCTGGCGAGAAGCGCTACCGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(194-458)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-661)

Domain of unknown function (DUF4131) (DUF4131)

(18-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.057

97.558

0.596
  comA Ralstonia pseudosolanacearum GMI1000

34.904

100

0.372

Multiple sequence alignment