Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLIMJ_RS13485 Genome accession   NZ_CP177034
Coordinates   2944579..2945214 (+) Length   211 a.a.
NCBI ID   WP_046382924.1    Uniprot ID   A0A2N7YSQ7
Organism   Pseudomonas veronii strain MPB10     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2939579..2950214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLIMJ_RS13470 (ACLIMJ_13470) - 2940219..2941589 (+) 1371 WP_126588666.1 sensor histidine kinase -
  ACLIMJ_RS13475 (ACLIMJ_13475) - 2941593..2942108 (-) 516 WP_017848016.1 DUF2062 domain-containing protein -
  ACLIMJ_RS13480 (ACLIMJ_13480) comA 2942256..2944469 (+) 2214 WP_411220159.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLIMJ_RS13485 (ACLIMJ_13485) exbB 2944579..2945214 (+) 636 WP_046382924.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLIMJ_RS13490 (ACLIMJ_13490) - 2945211..2945639 (+) 429 WP_046382925.1 ExbD/TolR family protein -
  ACLIMJ_RS13495 (ACLIMJ_13495) lpxK 2945639..2946649 (+) 1011 WP_046382926.1 tetraacyldisaccharide 4'-kinase -
  ACLIMJ_RS13500 (ACLIMJ_13500) - 2946673..2946858 (+) 186 WP_003174668.1 Trm112 family protein -
  ACLIMJ_RS13505 (ACLIMJ_13505) kdsB 2946855..2947619 (+) 765 WP_017848011.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLIMJ_RS13510 (ACLIMJ_13510) - 2947619..2948083 (+) 465 WP_017848010.1 low molecular weight protein-tyrosine-phosphatase -
  ACLIMJ_RS13515 (ACLIMJ_13515) murB 2948080..2949099 (+) 1020 WP_079444176.1 UDP-N-acetylmuramate dehydrogenase -
  ACLIMJ_RS13520 (ACLIMJ_13520) - 2949174..2949845 (-) 672 WP_017848008.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22884.02 Da        Isoelectric Point: 7.3613

>NTDB_id=1084958 ACLIMJ_RS13485 WP_046382924.1 2944579..2945214(+) (exbB) [Pseudomonas veronii strain MPB10]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWGWIKNKQLDKQKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGDKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1084958 ACLIMJ_RS13485 WP_046382924.1 2944579..2945214(+) (exbB) [Pseudomonas veronii strain MPB10]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCTTGAGCTCCATCGCCGCACTCGGCATCGTTGC
CGAACGCCTGTGGACCTTGCGCGCCAGCCGTGTCACACCCGAGCATCTGCTGGGGCAGGTCTGGGGCTGGATCAAGAACA
AGCAGCTCGACAAGCAGAAACTCAAGGAGCTGCGTGCCAATTCACCCCTGGGTGAAATTCTCGCGGCCGGGCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCGCGGGTCATCCATGAGCTGGAGCGTTATAT
CAACGCCCTCGGCACTATCGCCGCCATGGCACCGTTGCTCGGCCTGCTGGGCACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGAGCACCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCCCTGATCACCACGGCA
GCGGGCCTGATGGTCGGTATTCCCTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAGTTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACTTGGTCGGGGACAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7YSQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment