Detailed information NTG0108354

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AACH39_RS14475
• Genome accession: NZ_AP029060
• Coordinates: 3040136..3040906 (+)
• Length: 256 a.a.
• NCBI ID: WP_338620465.1
• Uniprot ID: -
• Organism: Paludibacterium sp. THUN1379
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3035136..3045906

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AACH39_RS14460 (THUN1379_28250)	-	3036641..3037807 (+)	1167	WP_338620462.1	porin	-
AACH39_RS14465 (THUN1379_28260)	-	3037955..3039085 (+)	1131	WP_338620463.1	GspE/PulE family protein	-
AACH39_RS14470 (THUN1379_28270)	-	3039090..3040136 (+)	1047	WP_338620464.1	type II secretion system F family protein	-
AACH39_RS14475 (THUN1379_28280)	pilD	3040136..3040906 (+)	771	WP_338620465.1	A24 family peptidase	Machinery gene
AACH39_RS14480 (THUN1379_28290)	coaE	3040921..3041523 (+)	603	WP_215778308.1	dephospho-CoA kinase	-
AACH39_RS14485 (THUN1379_28300)	zapD	3041568..3042326 (+)	759	WP_215778306.1	cell division protein ZapD	-
AACH39_RS14490 (THUN1379_28310)	-	3042335..3042517 (+)	183	WP_215778304.1	DNA gyrase inhibitor YacG	-
AACH39_RS14495 (THUN1379_28320)	-	3042584..3043834 (-)	1251	WP_215778301.1	N-acetylmuramoyl-L-alanine amidase	-
AACH39_RS14500 (THUN1379_28330)	tsaE	3043792..3044280 (-)	489	WP_215778299.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
AACH39_RS14505 (THUN1379_28340)	queG	3044279..3045364 (+)	1086	WP_338620466.1	tRNA epoxyqueuosine(34) reductase QueG	-
AACH39_RS14510 (THUN1379_28350)	-	3045366..3045782 (-)	417	WP_215778295.1	MaoC family dehydratase	-

Sequence

Protein

• Length: 256 a.a.
• Molecular weight: 28253.06 Da
• Isoelectric Point: 9.5620

>NTDB_id=108354 AACH39_RS14475 WP_338620465.1 3040136..3040906(+) (pilD) [Paludibacterium sp. THUN1379]
MMISLLPWWLVGLFGLLIGSFLNVLIHRLPRMVRGEVSGVYNPVWPRSHCPACRHVLRARDLVPVLSWLCLRGRCAFCRA
GISARYPLVELLTGSCFALLAWRAGDAYWLLGGLWLTACLIALLVIDAETGLLPDSLTLPLLWAGLLFNLNGARVPLSQA
VLGAVAGYLVLWLLYWCFRLLTGREGLGYGDFKLLAALGAWLGWQALPPLLLLSSLTGLVAAGILMLLRRMSRRDALPFG
PFLALAGWMYWLWGAA

Nucleotide

• Length: 771 bp

>NTDB_id=108354 AACH39_RS14475 WP_338620465.1 3040136..3040906(+) (pilD) [Paludibacterium sp. THUN1379]
ATGATGATTTCCTTGCTTCCCTGGTGGCTGGTCGGCCTGTTTGGCCTGCTGATCGGCAGTTTTCTGAACGTACTGATCCA
CCGCCTGCCGCGCATGGTGCGAGGGGAGGTCAGCGGGGTGTACAACCCGGTCTGGCCGCGTTCGCATTGTCCGGCTTGTC
GCCATGTCCTGCGTGCTCGTGACCTGGTTCCGGTGCTCTCCTGGCTGTGCCTGCGCGGACGTTGTGCCTTTTGCCGGGCG
GGCATTTCCGCACGCTACCCCTTGGTCGAGCTGCTGACGGGGAGTTGTTTCGCCTTGCTGGCCTGGCGCGCGGGGGATGC
TTACTGGCTGCTTGGCGGGCTGTGGCTGACGGCCTGCCTGATCGCCCTGCTGGTCATCGATGCCGAAACCGGGCTGTTGC
CGGACAGCCTGACGCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAACCTGAACGGCGCCCGTGTCCCGCTCTCGCAGGCT
GTGCTCGGGGCGGTGGCTGGTTATCTGGTGCTGTGGCTGTTGTACTGGTGCTTCCGGCTGCTGACCGGGCGTGAAGGCCT
GGGGTATGGCGATTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGCAGGCGTTGCCGCCGCTGCTGCTGCTGT
CTTCGCTGACAGGTTTGGTTGCGGCGGGTATCCTTATGCTTTTGCGGCGCATGTCGCGCCGTGATGCATTGCCCTTCGGA
CCATTTCTGGCGCTGGCTGGCTGGATGTACTGGCTGTGGGGGGCTGCTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-103)

• Type IV leader peptidase family (Peptidase_A24) (116-221)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	51.562	100	0.516
pilD	Vibrio cholerae strain A1552	50	100	0.512
pilD	Vibrio campbellii strain DS40M4	48.327	100	0.508
pilD	Acinetobacter baumannii D1279779	45.385	100	0.461
pilD	Acinetobacter nosocomialis M2	45.385	100	0.461
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.196	87.5	0.387