Detailed information NTG1083435

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLIN3_RS05460
• Genome accession: NZ_CP176868
• Coordinates: 1233603..1234469 (-)
• Length: 288 a.a.
• NCBI ID: WP_411566254.1
• Uniprot ID: -
• Organism: Pseudomonas orientalis strain MPB20
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1228603..1239469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLIN3_RS05425 (ACLIN3_05425)	-	1229476..1230774 (-)	1299	WP_181282728.1	NAD(P)/FAD-dependent oxidoreductase	-
ACLIN3_RS05430 (ACLIN3_05430)	-	1230835..1231008 (-)	174	WP_065887994.1	DUF3094 family protein	-
ACLIN3_RS05435 (ACLIN3_05435)	-	1231062..1231691 (-)	630	WP_181282727.1	DUF1780 domain-containing protein	-
ACLIN3_RS05440 (ACLIN3_05440)	-	1231821..1232510 (+)	690	WP_191956596.1	energy-coupling factor ABC transporter permease	-
ACLIN3_RS05445 (ACLIN3_05445)	-	1232574..1232789 (+)	216	WP_181282725.1	hypothetical protein	-
ACLIN3_RS05450 (ACLIN3_05450)	yacG	1232786..1232986 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
ACLIN3_RS05455 (ACLIN3_05455)	coaE	1232983..1233606 (-)	624	WP_181282724.1	dephospho-CoA kinase	-
ACLIN3_RS05460 (ACLIN3_05460)	pilD	1233603..1234469 (-)	867	WP_411566254.1	prepilin peptidase	Machinery gene
ACLIN3_RS05465 (ACLIN3_05465)	pilC	1234466..1235674 (-)	1209	WP_411566255.1	type II secretion system F family protein	Machinery gene
ACLIN3_RS05470 (ACLIN3_05470)	-	1235873..1236286 (+)	414	WP_411566718.1	pilin	-
ACLIN3_RS05480 (ACLIN3_05480)	-	1236600..1236905 (+)	306	WP_181282722.1	DUF6388 family protein	-
ACLIN3_RS05485 (ACLIN3_05485)	nadC	1237025..1237873 (-)	849	WP_243353320.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31669.05 Da
• Isoelectric Point: 7.9195

>NTDB_id=1083435 ACLIN3_RS05460 WP_411566254.1 1233603..1234469(-) (pilD) [Pseudomonas orientalis strain MPB20]
MSALLGEQPWAFVGMALVLGLIIGSFLNVLVWRLPKMLEREWRAQAHEILGLPAAPAEPVYNLMRPNSCCPHCDQPIRPW
ENIPLVSYLMLKGRCAHCRAAISARYPFTELACAMISAIVAWHFGFGWQAGAVMLLSWGLLGMSLIDVDHQLLPDVMVLP
LLWLGLVLNSLGLLATLPDALWGAVLGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLF
AGLLLMRGRKTPMSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1083435 ACLIN3_RS05460 WP_411566254.1 1233603..1234469(-) (pilD) [Pseudomonas orientalis strain MPB20]
TTGAGCGCGTTGCTGGGCGAGCAGCCCTGGGCATTTGTCGGCATGGCGCTGGTGCTGGGCCTGATCATTGGCAGCTTCCT
CAATGTGCTGGTATGGCGTCTGCCCAAAATGCTCGAACGCGAATGGCGCGCCCAGGCCCATGAGATCCTCGGCCTGCCCG
CCGCGCCAGCGGAGCCGGTCTATAACCTGATGCGCCCGAATTCTTGCTGTCCACACTGCGACCAGCCGATTCGCCCCTGG
GAGAATATCCCCCTGGTCAGCTACCTGATGCTCAAGGGACGTTGCGCCCATTGCCGTGCAGCGATCAGCGCGCGCTACCC
CTTCACTGAACTGGCCTGTGCGATGATATCCGCCATCGTTGCCTGGCACTTCGGCTTTGGCTGGCAGGCCGGCGCAGTGA
TGCTGCTGAGTTGGGGGTTGCTGGGCATGAGCCTGATCGATGTGGATCACCAACTGCTGCCGGATGTCATGGTGCTGCCG
CTGCTGTGGCTGGGGCTTGTCCTCAATAGCCTGGGCCTGCTCGCGACATTGCCCGATGCGTTATGGGGCGCGGTGCTCGG
TTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGATGGCATGGGCCATGGCGACTTCAAGC
TATTGGCGCTGCTGGGTGCCTGGGGCGGCTGGCAGATACTGCCGATGACGCTGCTGATGGCGTCACTGCTCGGCTTGTTT
GCCGGGCTGCTGCTGATGCGCGGGCGCAAGACGCCTATGTCGGCACCGATGCCATTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.158	96.528	0.503
pilD	Vibrio campbellii strain DS40M4	48.043	97.569	0.469
pilD	Neisseria gonorrhoeae MS11	47.794	94.444	0.451
pilD	Acinetobacter baumannii D1279779	45.29	95.833	0.434
pilD	Acinetobacter nosocomialis M2	45.29	95.833	0.434