Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACLH0H_RS01615 Genome accession   NZ_CP176793
Coordinates   349670..351895 (-) Length   741 a.a.
NCBI ID   WP_411380723.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344670..356895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0H_RS01580 (ACLH0H_01580) murB 345065..346084 (-) 1020 WP_411380719.1 UDP-N-acetylmuramate dehydrogenase -
  ACLH0H_RS01585 (ACLH0H_01585) - 346081..346545 (-) 465 WP_411380720.1 low molecular weight protein-tyrosine-phosphatase -
  ACLH0H_RS01590 (ACLH0H_01590) kdsB 346545..347309 (-) 765 WP_411380721.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLH0H_RS01595 (ACLH0H_01595) - 347306..347491 (-) 186 WP_003174668.1 Trm112 family protein -
  ACLH0H_RS01600 (ACLH0H_01600) lpxK 347516..348526 (-) 1011 WP_411380722.1 tetraacyldisaccharide 4'-kinase -
  ACLH0H_RS01605 (ACLH0H_01605) - 348526..348954 (-) 429 WP_076950764.1 ExbD/TolR family protein -
  ACLH0H_RS01610 (ACLH0H_01610) exbB 348951..349586 (-) 636 WP_076950765.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLH0H_RS01615 (ACLH0H_01615) comA 349670..351895 (-) 2226 WP_411380723.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLH0H_RS01620 (ACLH0H_01620) - 352030..352545 (+) 516 WP_076950767.1 DUF2062 domain-containing protein -
  ACLH0H_RS01625 (ACLH0H_01625) - 352716..355469 (+) 2754 WP_411380724.1 response regulator -
  ACLH0H_RS01630 (ACLH0H_01630) - 355749..356738 (+) 990 WP_411380725.1 2-hydroxyacid dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80488.59 Da        Isoelectric Point: 10.8697

>NTDB_id=1083039 ACLH0H_RS01615 WP_411380723.1 349670..351895(-) (comA) [Pseudomonas sp. MPB26]
MSTGMFALALGLLALRLLPALPPTGWLIAVLALALMLLPFRTYPLAFFLLGLSWACISAQSALDDRLKPALDGQTRWVEG
RVIGLPQRTGEAVRFELADSRSRNARLPKRIRVSWRGGPSVHSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARNAWRDSVRQRLMAVDAQGREAGLIALVLGDGSGLATTDWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFGAALGYGLLAGSGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALDGVLMLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQAWTRPQWLIAIGLFPALLVLGLPISLSAPLANLVAVPWISLVVLPMAL
LGTALLPLPFVGEGLLWLAGGALGGLFNALAWLAGQMPAWIPAEVALGYWLVSLLGAVLLLLPKGLPFRVLGWPMLLLAA
FPPREEVPHGQVEVLQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVRELDMMLLSHADADHAGGA
AVVARGMPIKRVVGGETEGLPAFLATQPCVSGERWSWDGVTFELWQWPDAINGNPKSCVLQVQANGERLLLTGDIDRAAE
RAMLASALAVPTDWLQAPHHGSRTSSSWAFLERLKPRSVLISRGRGNAFGHPHPQVLARYQRLGSQVYDSAEQGAVRLQL
GAFAPPIVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=1083039 ACLH0H_RS01615 WP_411380723.1 349670..351895(-) (comA) [Pseudomonas sp. MPB26]
ATGAGCACAGGGATGTTCGCGCTGGCGCTGGGGCTGCTGGCCTTGCGCTTGCTACCGGCGTTGCCGCCCACTGGATGGCT
GATTGCCGTGTTGGCGCTGGCATTGATGCTGTTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGCTGGGGCTGAGCT
GGGCGTGCATCAGCGCGCAGTCGGCGCTGGATGATCGCCTGAAGCCGGCGCTGGACGGCCAGACACGCTGGGTAGAAGGG
CGGGTCATCGGGCTGCCGCAACGCACGGGGGAGGCGGTGCGTTTCGAGTTGGCCGACAGTCGGTCGCGAAATGCCCGGCT
GCCCAAACGTATCCGGGTGTCCTGGCGCGGTGGGCCGTCGGTGCACAGCGGTGAACGCTGGCGGCTGGCAATCACCCTCA
AGCGGCCGGCCGGGTTGCTGAACTTCCATGGCTTTGACCAGGAAGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTGAAGGACGGCGAGCGCCTGGCACCGGCCCGAAACGCCTGGCGCGACAGCGTGCGCCAGCGCCTGATGGCGGTGGA
TGCCCAAGGCCGTGAAGCCGGGCTGATCGCGCTGGTGCTGGGCGACGGCTCTGGTCTGGCGACCACCGATTGGCAGGTAT
TGCAGGACACCGGTACCGTGCATCTACTGGTCATTTCCGGCCAGCACATCGGTTTACTGGCGGGCTTGATCTACGGGTTG
ATCGCTGGGTTGGCGCGCTATGGATGCTGGCCCCGCACCTGGCCTTGGCTGCCATGGGCCTGTGGCCTGGCGTTCGGCGC
CGCGCTGGGTTATGGCTTGCTCGCCGGGTCTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTCGGTCTGGTGTTGTTGT
GGCGCCTGCGCTTTCGGCATCTGGGGCTGTGGTGGCCGTTGCTGCTGGCACTCGATGGGGTGCTGATGCTGGAGCCGCTG
GCCAGTCTGCAGCCGGGTTTCTGGTTGTCGTTTGCCGCGGTGGCAGTGCTGATCCTGGCATTCGGTGGGCGGTTGGGCCC
CTGGAGCCTGTGGCAGGCCTGGACCCGCCCGCAGTGGCTGATTGCAATTGGATTGTTTCCCGCCTTGCTGGTGTTGGGGC
TGCCCATCAGCCTGAGTGCGCCGCTGGCCAATCTGGTGGCGGTGCCCTGGATCAGCCTGGTGGTCTTGCCGATGGCGTTG
CTCGGCACGGCATTGCTGCCTTTACCCTTTGTAGGTGAAGGGTTGCTGTGGCTGGCGGGCGGCGCGCTGGGTGGGTTGTT
CAACGCCCTGGCCTGGCTCGCAGGGCAGATGCCCGCCTGGATTCCCGCCGAGGTTGCATTGGGGTATTGGCTGGTGAGCC
TGCTTGGCGCCGTGCTGCTGTTGCTGCCAAAAGGCCTGCCGTTTCGGGTACTGGGCTGGCCGATGCTGTTGCTGGCGGCG
TTTCCCCCGCGCGAGGAGGTACCTCACGGGCAAGTGGAGGTGCTGCAACTGGACGTCGGCCAGGGCCAGTCGCTGATTTT
GCGCACCCGTCACCACACCTTGCTGTATGACGCCGGCCCGCGTTCCGGAACCTTTGACCTGGGCGCCCGCGTGGTGTTGC
CGTCGTTGCGAAAGCTCGGGGTACGCGAATTGGACATGATGTTGCTCAGCCACGCCGACGCGGATCATGCCGGTGGCGCG
GCCGTGGTTGCCAGGGGAATGCCGATCAAACGCGTGGTCGGCGGGGAGACCGAGGGGCTGCCGGCGTTTCTCGCCACCCA
GCCGTGCGTCAGTGGCGAACGGTGGAGCTGGGATGGTGTGACGTTCGAACTGTGGCAGTGGCCTGACGCTATCAACGGCA
ACCCGAAGTCCTGTGTATTGCAGGTGCAGGCCAACGGCGAGCGCCTGTTGCTCACCGGCGATATTGATCGCGCGGCCGAA
CGGGCCATGCTTGCCTCAGCCCTGGCGGTGCCCACCGATTGGTTGCAAGCGCCGCACCACGGCAGTCGCACTTCGTCGTC
CTGGGCGTTCCTGGAACGCCTCAAGCCGCGCTCCGTGCTCATTTCACGGGGGCGCGGCAATGCGTTCGGCCATCCCCATC
CGCAGGTCCTGGCACGTTACCAGCGCTTGGGCAGCCAGGTGTATGACAGCGCCGAGCAAGGGGCCGTGCGCCTGCAATTG
GGGGCCTTCGCGCCACCGATTGTTGCGCGCAGTCAACGAAGGTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-674)

Domain of unknown function (DUF4131) (DUF4131)

(19-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.694

97.166

0.59
  comA Ralstonia pseudosolanacearum GMI1000

35.206

100

0.381

Multiple sequence alignment