Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACLH0H_RS01610 Genome accession   NZ_CP176793
Coordinates   348951..349586 (-) Length   211 a.a.
NCBI ID   WP_076950765.1    Uniprot ID   A0A1V2KEC5
Organism   Pseudomonas sp. MPB26     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 343951..354586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0H_RS01575 (ACLH0H_01575) - 344325..344996 (+) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -
  ACLH0H_RS01580 (ACLH0H_01580) murB 345065..346084 (-) 1020 WP_411380719.1 UDP-N-acetylmuramate dehydrogenase -
  ACLH0H_RS01585 (ACLH0H_01585) - 346081..346545 (-) 465 WP_411380720.1 low molecular weight protein-tyrosine-phosphatase -
  ACLH0H_RS01590 (ACLH0H_01590) kdsB 346545..347309 (-) 765 WP_411380721.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACLH0H_RS01595 (ACLH0H_01595) - 347306..347491 (-) 186 WP_003174668.1 Trm112 family protein -
  ACLH0H_RS01600 (ACLH0H_01600) lpxK 347516..348526 (-) 1011 WP_411380722.1 tetraacyldisaccharide 4'-kinase -
  ACLH0H_RS01605 (ACLH0H_01605) - 348526..348954 (-) 429 WP_076950764.1 ExbD/TolR family protein -
  ACLH0H_RS01610 (ACLH0H_01610) exbB 348951..349586 (-) 636 WP_076950765.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACLH0H_RS01615 (ACLH0H_01615) comA 349670..351895 (-) 2226 WP_411380723.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACLH0H_RS01620 (ACLH0H_01620) - 352030..352545 (+) 516 WP_076950767.1 DUF2062 domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22844.95 Da        Isoelectric Point: 6.8764

>NTDB_id=1083038 ACLH0H_RS01610 WP_076950765.1 348951..349586(-) (exbB) [Pseudomonas sp. MPB26]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWAWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGNA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1083038 ACLH0H_RS01610 WP_076950765.1 348951..349586(-) (exbB) [Pseudomonas sp. MPB26]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGTGTCACTCCCGAGCATCTGCTGGGTCAGGTCTGGGCCTGGATCAAGAACA
AGCAGCTCGACAAGGAAAAACTCAAGGAGCTGCGCGCCAACTCCCCGCTGGGTGAAATCCTCGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCCCGCGTCATCCATGAGCTGGAGCGCTACAT
CAACGCCCTGGGCACCATTGCCGCCATGGCGCCGTTGCTCGGCCTGCTCGGTACGGTACTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCTCCAACGCCGCTGTGCTGGCGGGGGGCATCTCCAAGGCACTGATCACCACGGCG
GCGGGCCTGATGGTCGGGATTCCTTCGGTGTTCTTCCATCGTTTCCTGCAGCGTCGTATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAACGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1V2KEC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844

Multiple sequence alignment