Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ACK3B6_RS16365 Genome accession   NZ_CP176792
Coordinates   3187870..3188514 (-) Length   214 a.a.
NCBI ID   WP_101864137.1    Uniprot ID   -
Organism   Bacillus halotolerans strain BCP32     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3182870..3193514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3B6_RS16330 (ACK3B6_16330) - 3184063..3184494 (+) 432 WP_044158935.1 Na(+)/H(+) antiporter subunit B -
  ACK3B6_RS16335 (ACK3B6_16335) - 3184494..3184835 (+) 342 WP_105955471.1 Na(+)/H(+) antiporter subunit C -
  ACK3B6_RS16340 (ACK3B6_16340) - 3184828..3186309 (+) 1482 WP_416042834.1 Na+/H+ antiporter subunit D -
  ACK3B6_RS16345 (ACK3B6_16345) - 3186315..3186791 (+) 477 WP_101864138.1 Na+/H+ antiporter subunit E -
  ACK3B6_RS16350 (ACK3B6_16350) - 3186791..3187075 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  ACK3B6_RS16355 (ACK3B6_16355) mnhG 3187059..3187433 (+) 375 WP_105955473.1 monovalent cation/H(+) antiporter subunit G -
  ACK3B6_RS16360 (ACK3B6_16360) - 3187472..3187852 (-) 381 WP_024122679.1 hotdog fold thioesterase -
  ACK3B6_RS16365 (ACK3B6_16365) comA 3187870..3188514 (-) 645 WP_101864137.1 two-component system response regulator ComA Regulator
  ACK3B6_RS16370 (ACK3B6_16370) comP 3188595..3190895 (-) 2301 WP_105991649.1 histidine kinase Regulator
  ACK3B6_RS16375 (ACK3B6_16375) comX 3190907..3191071 (-) 165 WP_105991648.1 competence pheromone ComX -
  ACK3B6_RS16380 (ACK3B6_16380) - 3191084..3191944 (-) 861 WP_105991687.1 polyprenyl synthetase family protein -
  ACK3B6_RS16385 (ACK3B6_16385) degQ 3192129..3192269 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  ACK3B6_RS16390 (ACK3B6_16390) - 3192730..3193098 (+) 369 WP_105955477.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24123.45 Da        Isoelectric Point: 4.6788

>NTDB_id=1083022 ACK3B6_RS16365 WP_101864137.1 3187870..3188514(-) (comA) [Bacillus halotolerans strain BCP32]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIHQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1083022 ACK3B6_RS16365 WP_101864137.1 3187870..3188514(-) (comA) [Bacillus halotolerans strain BCP32]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACACCAGCATGATTTCTCATCATATGATCTCATCTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCCGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991

Multiple sequence alignment