Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ACK3BK_RS07930 Genome accession   NZ_CP176784
Coordinates   1686373..1688595 (+) Length   740 a.a.
NCBI ID   WP_411384062.1    Uniprot ID   -
Organism   Pseudomonas sp. L7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681373..1693595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3BK_RS07910 (ACK3BK_07910) - 1683242..1683865 (+) 624 WP_186666822.1 glutathione S-transferase -
  ACK3BK_RS07915 (ACK3BK_07915) - 1684013..1684945 (+) 933 WP_186666821.1 ABC transporter ATP-binding protein -
  ACK3BK_RS07920 (ACK3BK_07920) - 1684942..1685721 (+) 780 WP_186666820.1 ABC transporter permease -
  ACK3BK_RS07925 (ACK3BK_07925) - 1685605..1686231 (-) 627 WP_186666819.1 DUF2062 domain-containing protein -
  ACK3BK_RS07930 (ACK3BK_07930) comA 1686373..1688595 (+) 2223 WP_411384062.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACK3BK_RS07935 (ACK3BK_07935) exbB 1688707..1689342 (+) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK3BK_RS07940 (ACK3BK_07940) - 1689339..1689773 (+) 435 WP_411384063.1 ExbD/TolR family protein -
  ACK3BK_RS07945 (ACK3BK_07945) lpxK 1689773..1690768 (+) 996 WP_186666816.1 tetraacyldisaccharide 4'-kinase -
  ACK3BK_RS07950 (ACK3BK_07950) - 1690810..1690995 (+) 186 WP_054893060.1 Trm112 family protein -
  ACK3BK_RS07955 (ACK3BK_07955) kdsB 1690992..1691756 (+) 765 WP_186666815.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK3BK_RS07960 (ACK3BK_07960) - 1691756..1692220 (+) 465 WP_186666814.1 low molecular weight protein-tyrosine-phosphatase -
  ACK3BK_RS07965 (ACK3BK_07965) murB 1692217..1693236 (+) 1020 WP_411384064.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80150.96 Da        Isoelectric Point: 10.7641

>NTDB_id=1082918 ACK3BK_RS07930 WP_411384062.1 1686373..1688595(+) (comA) [Pseudomonas sp. L7]
MRTGMSALALGLLSLGLLPALPSVGWLFLLFLSALMCLFTRAWPIGWFLLGMSWACWSAQQALDDRLVAELDGRTLWLEG
RVIGLATQSGRSVRFELDEAQSRRAQLPRRMQLSWFEGPMVRAGERWRLAVNLRRPQGLLNPHGPDREAMLLARRIGATG
SVKAGEMLAPATGGWRDRLRQRVLAVDAQGREAVLAALVLGDGSGLGREDWQALQATGTVHLMVISGQHIGLLAGLVYGL
VAGLARLGAWPGRLPWLPWACGLAMAAALAYGALAGFQVPVQRACLMLATVLAWRLRFRHLGAFFPLLLALVGVLLFEPL
ASLMPGFWLSFAAVAVLIYCFSARLGAWRPWQAWSRAQWAIAVGLLPALLALGLPVSLTAPLVNLLAVPWISLAVLPLAL
LGTVALPLTGVGESLLWLAGGLIDLMFRGLGLLAEWRPAWTPPSLSLWAWGLVCAGAVLLLLPRGVPLRGLGAVMLLALW
TPREQVPHAEVEVWQLDVGQGLAVLLRTQHHSLLYDAGSAMGINDLGQSVVLPTLRGLGVNRLDLMLISHAHADHAGGAL
AVQRGLPVARVLAGEARELPVALGAQVCSSGERWEWDGVTFSLWHWPGGKSSNDRSCVLLVEAQGERLLLAGDMEAAAER
AWLASADAARVDWLQSPHHGSRSSSTEPFIRAIAPRGVMISRGRYNGFGHPHPQVIERYRRHGLAVHDTALHGALRLQLG
SRGEVEGLRAQRRFWREPPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1082918 ACK3BK_RS07930 WP_411384062.1 1686373..1688595(+) (comA) [Pseudomonas sp. L7]
ATGCGCACAGGGATGTCTGCGCTGGCGCTCGGGTTGTTGAGCCTGGGTCTCTTGCCTGCCTTGCCGTCGGTCGGGTGGCT
GTTCCTTCTGTTCTTGTCGGCACTGATGTGCCTGTTCACTCGTGCGTGGCCGATAGGGTGGTTCCTGTTGGGGATGAGCT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTTGATGATCGTCTGGTCGCCGAGCTCGATGGGCGCACGCTGTGGCTGGAGGGC
AGGGTAATAGGGCTGGCGACCCAGTCTGGTCGCAGCGTGCGTTTCGAACTGGACGAAGCGCAGTCCCGACGTGCGCAGTT
GCCCCGCCGGATGCAACTGAGCTGGTTCGAGGGTCCCATGGTCAGGGCTGGCGAGCGCTGGCGACTCGCGGTCAACCTCA
GACGCCCTCAGGGGCTGCTCAATCCTCATGGTCCCGACCGCGAAGCGATGCTGCTGGCGCGGCGAATAGGTGCCACCGGA
TCGGTCAAGGCCGGGGAGATGCTGGCTCCGGCAACCGGGGGCTGGCGCGACAGGCTGCGCCAGCGCGTGCTGGCGGTGGA
CGCCCAGGGGCGAGAGGCGGTGCTGGCTGCGCTGGTGCTCGGTGACGGTTCTGGACTGGGGCGGGAGGACTGGCAGGCAC
TGCAGGCGACCGGCACCGTGCACCTGATGGTGATCTCGGGGCAGCACATAGGCTTGCTGGCGGGGTTGGTCTATGGGCTG
GTTGCTGGTTTGGCGCGGCTGGGCGCCTGGCCTGGGAGGCTACCCTGGTTGCCTTGGGCGTGTGGCCTGGCGATGGCGGC
AGCCCTGGCTTATGGCGCGCTCGCTGGCTTTCAGGTGCCGGTGCAGCGTGCCTGCCTGATGCTGGCCACTGTCTTGGCCT
GGCGTCTGCGCTTTCGTCATTTAGGAGCGTTTTTCCCCCTGTTGCTGGCATTGGTCGGCGTATTGCTGTTCGAGCCCTTG
GCCAGCCTGATGCCGGGCTTCTGGCTGTCTTTTGCTGCGGTGGCGGTATTGATCTACTGCTTCAGCGCGCGCCTGGGTGC
CTGGCGGCCTTGGCAGGCCTGGAGTCGCGCTCAATGGGCGATCGCTGTCGGTTTGTTGCCCGCGCTGCTGGCGTTGGGGC
TACCGGTCAGTCTGACCGCGCCCTTGGTCAATCTCCTGGCAGTACCTTGGATTAGCCTGGCGGTGTTGCCGTTGGCCCTG
CTTGGAACGGTAGCATTGCCGTTGACGGGGGTGGGCGAGTCATTGCTGTGGCTGGCAGGTGGATTGATCGACCTGATGTT
TCGCGGGCTCGGCCTGCTGGCCGAATGGCGGCCAGCCTGGACGCCCCCGTCGCTTTCGCTGTGGGCGTGGGGGCTGGTCT
GTGCGGGTGCGGTGCTGCTCCTGCTGCCACGTGGCGTGCCGCTGCGAGGACTGGGTGCGGTGATGCTGCTGGCGCTGTGG
ACGCCTCGCGAGCAGGTGCCGCACGCAGAGGTGGAGGTGTGGCAACTGGATGTCGGTCAGGGCCTGGCGGTGTTGCTGCG
CACGCAGCATCACAGCCTGCTCTACGATGCCGGGTCGGCGATGGGCATCAATGACCTTGGGCAGAGTGTGGTATTGCCGA
CCTTGCGCGGGTTGGGCGTCAACCGGCTCGATCTGATGCTGATCAGCCATGCACATGCCGACCACGCTGGTGGCGCTCTG
GCCGTGCAGCGCGGCCTGCCGGTGGCGCGGGTGCTGGCTGGCGAGGCACGGGAGTTGCCCGTAGCCTTGGGCGCGCAGGT
ATGCAGCAGTGGTGAGCGCTGGGAGTGGGATGGCGTGACTTTCTCGCTTTGGCACTGGCCGGGTGGCAAGAGCAGTAACG
ACCGCTCCTGCGTGCTGCTGGTCGAGGCTCAGGGCGAGCGCTTGCTGCTGGCTGGTGACATGGAGGCAGCCGCCGAGCGC
GCCTGGCTGGCATCCGCCGATGCGGCGCGTGTCGACTGGCTGCAGTCACCGCATCACGGCAGCCGCAGTTCCTCCACCGA
GCCCTTCATCCGCGCTATCGCGCCGCGTGGCGTGATGATTTCCCGTGGGCGATACAATGGCTTTGGTCACCCGCACCCGC
AGGTAATCGAGCGCTATCGGCGGCATGGGTTGGCGGTGCATGACACGGCATTGCACGGGGCGCTGCGCCTGCAACTGGGC
AGTCGGGGAGAGGTCGAGGGATTGCGTGCGCAGCGGCGCTTTTGGCGTGAGCCGCCTTCGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.162

0.576
  comA Ralstonia pseudosolanacearum GMI1000

35.18

100

0.369

Multiple sequence alignment