Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACK3BK_RS07935 Genome accession   NZ_CP176784
Coordinates   1688707..1689342 (+) Length   211 a.a.
NCBI ID   WP_054893125.1    Uniprot ID   A0AAD0PE55
Organism   Pseudomonas sp. L7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683707..1694342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK3BK_RS07915 (ACK3BK_07915) - 1684013..1684945 (+) 933 WP_186666821.1 ABC transporter ATP-binding protein -
  ACK3BK_RS07920 (ACK3BK_07920) - 1684942..1685721 (+) 780 WP_186666820.1 ABC transporter permease -
  ACK3BK_RS07925 (ACK3BK_07925) - 1685605..1686231 (-) 627 WP_186666819.1 DUF2062 domain-containing protein -
  ACK3BK_RS07930 (ACK3BK_07930) comA 1686373..1688595 (+) 2223 WP_411384062.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACK3BK_RS07935 (ACK3BK_07935) exbB 1688707..1689342 (+) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACK3BK_RS07940 (ACK3BK_07940) - 1689339..1689773 (+) 435 WP_411384063.1 ExbD/TolR family protein -
  ACK3BK_RS07945 (ACK3BK_07945) lpxK 1689773..1690768 (+) 996 WP_186666816.1 tetraacyldisaccharide 4'-kinase -
  ACK3BK_RS07950 (ACK3BK_07950) - 1690810..1690995 (+) 186 WP_054893060.1 Trm112 family protein -
  ACK3BK_RS07955 (ACK3BK_07955) kdsB 1690992..1691756 (+) 765 WP_186666815.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACK3BK_RS07960 (ACK3BK_07960) - 1691756..1692220 (+) 465 WP_186666814.1 low molecular weight protein-tyrosine-phosphatase -
  ACK3BK_RS07965 (ACK3BK_07965) murB 1692217..1693236 (+) 1020 WP_411384064.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=1082919 ACK3BK_RS07935 WP_054893125.1 1688707..1689342(+) (exbB) [Pseudomonas sp. L7]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1082919 ACK3BK_RS07935 WP_054893125.1 1688707..1689342(+) (exbB) [Pseudomonas sp. L7]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCGTCGCAGCCATGGCGATTGTCGT
CGAACGCCTGTGGACCCTGCGTGCCAGTCGCGTCACGCCACCGCACCTGTTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGTGCCGACTCCCCCCTGGGCGAGATTCTCGCCGCGGGCCTGGCAAAC
TCCCGCCATGGCCGCGAGATCATGAAAGAATGCATCGAGGAGGCCGCCTCCCGAGTCATCCACGAGCTCGAGCGCTACAT
CAGCACCTTGGGCACCATCGCTGCAATGGCGCCGCTGCTCGGCCTGCTTGGCACCGTGCTCGGCATGATCGACATTTTCA
GTGCGTTCATGGGCTCGCAGATGACGGCCAACGCCGCGGTGCTCGCTGGTGGTATCTCCAAGGCGCTGGTCACCACCGCA
GCGGGCCTGATGGTGGGTATCCCCGCGGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGACCGCGAGGTCGAGGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment