Detailed information NTG1082871

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACLH0J_RS29770
• Genome accession: NZ_CP176771
• Coordinates: 6539884..6540750 (+)
• Length: 288 a.a.
• NCBI ID: WP_411390242.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MPB23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6534884..6545750

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACLH0J_RS29740 (ACLH0J_29740)	nadC	6535165..6536013 (+)	849	WP_411390238.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACLH0J_RS29745 (ACLH0J_29745)	-	6536062..6536367 (-)	306	WP_411390239.1	DUF6388 family protein	-
ACLH0J_RS29755 (ACLH0J_29755)	-	6536625..6538025 (-)	1401	WP_411390240.1	O-antigen ligase family protein	-
ACLH0J_RS29760 (ACLH0J_29760)	-	6538062..6538475 (-)	414	WP_411392912.1	pilin	-
ACLH0J_RS29765 (ACLH0J_29765)	pilC	6538679..6539887 (+)	1209	WP_411390241.1	type II secretion system F family protein	Machinery gene
ACLH0J_RS29770 (ACLH0J_29770)	pilD	6539884..6540750 (+)	867	WP_411390242.1	prepilin peptidase	Machinery gene
ACLH0J_RS29775 (ACLH0J_29775)	coaE	6540747..6541370 (+)	624	WP_411390243.1	dephospho-CoA kinase	-
ACLH0J_RS29780 (ACLH0J_29780)	yacG	6541367..6541567 (+)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
ACLH0J_RS29785 (ACLH0J_29785)	-	6541564..6541779 (-)	216	WP_003171680.1	hypothetical protein	-
ACLH0J_RS29790 (ACLH0J_29790)	-	6541855..6542544 (-)	690	WP_411390244.1	energy-coupling factor ABC transporter permease	-
ACLH0J_RS29795 (ACLH0J_29795)	-	6542541..6543008 (-)	468	WP_411390245.1	FAD/FMN-containing dehydrogenase	-
ACLH0J_RS29800 (ACLH0J_29800)	-	6543108..6543737 (+)	630	WP_010565579.1	DUF1780 domain-containing protein	-
ACLH0J_RS29805 (ACLH0J_29805)	-	6543791..6543964 (+)	174	WP_016976295.1	DUF3094 family protein	-
ACLH0J_RS29810 (ACLH0J_29810)	-	6544025..6545323 (+)	1299	WP_411390246.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31846.88 Da
• Isoelectric Point: 7.6837

>NTDB_id=1082871 ACLH0J_RS29770 WP_411390242.1 6539884..6540750(+) (pilD) [Pseudomonas sp. MPB23]
MSLLLSEYPWAFVALALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEALGLPAEPNGSTYNLAHPNSCCPHCNHPIRPW
ENIPLLSYLFLRGRCAHCQGTISARYPLTELASGIICAVVAWHFGFGWQAAAVMVVSWGLLAMSLIDADHQLLPDVLVLP
LLWLGLIVNAFSLLTTLPDALWGAVIGYMSLWTVFWLFKLVTGKEGMGYGDFKLLALLGAWGGWQILPMTLLISSLLGVF
VGLILMRLRKTQASTPMPFGPYLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=1082871 ACLH0J_RS29770 WP_411390242.1 6539884..6540750(+) (pilD) [Pseudomonas sp. MPB23]
TTGAGCCTGCTGCTCAGTGAGTACCCTTGGGCGTTTGTCGCGCTGGCGTTGGTGCTGGGGCTGATCGTCGGCAGCTTTCT
CAATGTGCTGGTATGGCGCCTGCCGAAAATGCTCGAGCGGGAATGGCGCGCCCAGGCCCATGAAGCGCTCGGTTTGCCTG
CCGAACCCAACGGATCGACCTACAACCTGGCGCACCCCAACTCCTGCTGCCCACACTGCAATCATCCGATTCGCCCGTGG
GAAAACATCCCACTGCTCAGCTATCTGTTCCTCAGGGGCCGCTGCGCCCATTGCCAGGGGACAATCAGCGCCCGCTATCC
GCTCACCGAACTGGCGAGCGGCATCATCTGTGCCGTGGTGGCCTGGCATTTTGGTTTCGGCTGGCAAGCGGCAGCGGTGA
TGGTCGTGAGCTGGGGCTTGCTGGCAATGAGCCTGATCGATGCAGACCACCAACTGCTGCCTGATGTCCTGGTGCTGCCA
TTGCTGTGGCTCGGGCTGATCGTCAATGCGTTCTCACTGTTGACCACATTGCCAGATGCCTTGTGGGGCGCGGTGATCGG
GTACATGAGCCTGTGGACCGTGTTCTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGGATGGGCTACGGTGACTTCAAGT
TACTGGCACTGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGATGACACTGTTGATCTCATCACTGCTGGGCGTGTTT
GTCGGGCTGATCCTGATGCGCCTGCGCAAGACCCAGGCGTCGACGCCCATGCCGTTTGGTCCATATCTGGCGATTGCCGG
CTGGATTGCATTGCTTTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCCGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (134-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.93	98.611	0.542
pilD	Vibrio campbellii strain DS40M4	51.071	97.222	0.497
pilD	Acinetobacter nosocomialis M2	49.817	94.792	0.472
pilD	Acinetobacter baumannii D1279779	49.817	94.792	0.472
pilD	Neisseria gonorrhoeae MS11	50	93.75	0.469