Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACLH0I_RS25210 Genome accession   NZ_CP176770
Coordinates   5788518..5789861 (+) Length   447 a.a.
NCBI ID   WP_411385665.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5783518..5794861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS25185 (ACLH0I_25185) pgeF 5783729..5784454 (-) 726 WP_411385663.1 peptidoglycan editing factor PgeF -
  ACLH0I_RS25190 (ACLH0I_25190) rluD 5784451..5785413 (-) 963 WP_186708981.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACLH0I_RS25195 (ACLH0I_25195) - 5785565..5786581 (+) 1017 WP_186708980.1 outer membrane protein assembly factor BamD -
  ACLH0I_RS25200 (ACLH0I_25200) - 5786706..5786942 (+) 237 WP_186708979.1 PP0621 family protein -
  ACLH0I_RS25205 (ACLH0I_25205) pilS 5786932..5788521 (+) 1590 WP_411385664.1 two-component system sensor histidine kinase NtrB Regulator
  ACLH0I_RS25210 (ACLH0I_25210) pilR 5788518..5789861 (+) 1344 WP_411385665.1 sigma-54-dependent transcriptional regulator Regulator
  ACLH0I_RS25215 (ACLH0I_25215) - 5790054..5790419 (-) 366 WP_411385666.1 DUF6124 family protein -
  ACLH0I_RS25220 (ACLH0I_25220) thiO 5791683..5792783 (-) 1101 WP_411385667.1 glycine oxidase ThiO -
  ACLH0I_RS25225 (ACLH0I_25225) - 5792840..5793238 (-) 399 WP_250964795.1 type IV pilin protein -

Sequence

Protein


Download         Length: 447 a.a.        Molecular weight: 49986.45 Da        Isoelectric Point: 5.7767

>NTDB_id=1082842 ACLH0I_RS25210 WP_411385665.1 5788518..5789861(+) (pilR) [Pseudomonas sp. MPB03]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGDAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPTSTLERCLLGDSPPMLGVRKQIEKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIEPLA
NHMLQRLASATGSPAAKLHPRALEALQNYRFPGNVRELENMLERAYTLCEQQLIEADDLRLAEGNATEAGNPDLMQVDNL
EDYLEEIERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1344 bp        

>NTDB_id=1082842 ACLH0I_RS25210 WP_411385665.1 5788518..5789861(+) (pilR) [Pseudomonas sp. MPB03]
TTGAACAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCAGGGGATGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAGCTGGTACAGCACATCCAGCAACGTTATCCACAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGATGCCCTCAAGGCCGGTGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGGGAACTGGTCACCAGCGCCCTGCGCCTGCCACCGGTCGCCACACCGACCAGCACCC
TCGAACGCTGCCTGCTGGGCGATTCGCCCCCCATGCTCGGTGTGCGCAAGCAGATCGAGAAACTCGCCCGCAGCCAGGCA
CCGGTATATATCAGCGGGGAATCGGGCTGCGGCAAGGAGCTGGTCGCCCGGTTGATTCACGAACAAGGCCCCCGTGCGAA
CCAGCGTTTTGTACCGGTCAACTGTGGGGCGATTCCCACAGAGTTGATGGAAAGCGAGTTCTTCGGGCACCGAAAAGGCA
GTTTCAGCGGCGCCATCGAAGATAAGCCCGGCTTATTCCAGGCAGCCCATGGCGGAACCTTGTTCCTCGATGAGGTGGCC
GACCTGCCCCTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAGGCCGTGCGCGCCGTGGGCGGCCAGCAGGA
GGAGGTGGTGGATGTGCGAATCCTCTGCGCCACCCACAAGGATCTCGACGCCGAGGTCGCCGCCGGACGCTTTCGCCAGG
ATCTGTATTACCGACTGAACGTCATCGAACTGCGCGTCCCGCCCTTGCGCGAACGCCGCGAAGACATCGAGCCCTTGGCC
AACCACATGCTCCAGCGCCTGGCCAGCGCTACCGGCAGCCCTGCGGCAAAGCTCCATCCGCGAGCCCTGGAAGCCCTGCA
GAACTACCGTTTCCCGGGCAATGTGCGGGAGTTGGAGAACATGCTTGAGCGGGCCTATACCTTGTGCGAACAGCAACTGA
TCGAAGCGGATGACCTGCGTCTGGCCGAGGGCAATGCGACTGAGGCGGGCAATCCCGATTTGATGCAGGTCGACAATCTC
GAGGATTACCTGGAAGAGATCGAGCGCAAGCTCATCCTCCAGGCATTGGAAGAAACCCGCTGGAACCGCACGGCGGCGGC
GCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAACTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.829

99.329

0.783
  pilR Acinetobacter baumannii strain A118

49.673

100

0.51

Multiple sequence alignment