Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   ACLH0I_RS25205 Genome accession   NZ_CP176770
Coordinates   5786932..5788521 (+) Length   529 a.a.
NCBI ID   WP_411385664.1    Uniprot ID   -
Organism   Pseudomonas sp. MPB03     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5781932..5793521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLH0I_RS25185 (ACLH0I_25185) pgeF 5783729..5784454 (-) 726 WP_411385663.1 peptidoglycan editing factor PgeF -
  ACLH0I_RS25190 (ACLH0I_25190) rluD 5784451..5785413 (-) 963 WP_186708981.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACLH0I_RS25195 (ACLH0I_25195) - 5785565..5786581 (+) 1017 WP_186708980.1 outer membrane protein assembly factor BamD -
  ACLH0I_RS25200 (ACLH0I_25200) - 5786706..5786942 (+) 237 WP_186708979.1 PP0621 family protein -
  ACLH0I_RS25205 (ACLH0I_25205) pilS 5786932..5788521 (+) 1590 WP_411385664.1 two-component system sensor histidine kinase NtrB Regulator
  ACLH0I_RS25210 (ACLH0I_25210) pilR 5788518..5789861 (+) 1344 WP_411385665.1 sigma-54-dependent transcriptional regulator Regulator
  ACLH0I_RS25215 (ACLH0I_25215) - 5790054..5790419 (-) 366 WP_411385666.1 DUF6124 family protein -
  ACLH0I_RS25220 (ACLH0I_25220) thiO 5791683..5792783 (-) 1101 WP_411385667.1 glycine oxidase ThiO -
  ACLH0I_RS25225 (ACLH0I_25225) - 5792840..5793238 (-) 399 WP_250964795.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58730.52 Da        Isoelectric Point: 7.3631

>NTDB_id=1082841 ACLH0I_RS25205 WP_411385664.1 5786932..5788521(+) (pilS) [Pseudomonas sp. MPB03]
MNAEATSPRIKQAQRLLRLYHLYRLSIGITLVLLISSNMDNRLLEYANDDLLRSGSWLYLVLNILLVVFLENTRRPARLF
GLALTDVLLLSWLFFAAGGAPSAIGNLIIVSVAIGNTLLRGRIGLLIAAVATLGIVGSSLFLGLSDSNRPSSYLQAGTLG
ALCFAAALLVQGLIRRLEASETLAEQRASEVVGLEALNALILQRMRTGILVLDRQRRVQLANESALNLLGMHDLVGQPID
DCSSALVERLQLWLNNPSLRPPSLTISGTGLTLQPSFIALGHNDQQQILVFLEDLAQVAQHAQQLKLASLGRLTAGIAHE
IRNPLGAISHAAQLLRESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTTPQRLDLRTWLDQFVRQTRESMADH
QRLHLSIDPGDYTTLMDPDQLTQVLDNLLRNAWRHSAMAHEQAEAWLKLFIDPHSQLSTLDIIDNGPGVTPEQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQI

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1082841 ACLH0I_RS25205 WP_411385664.1 5786932..5788521(+) (pilS) [Pseudomonas sp. MPB03]
GTGAACGCTGAGGCTACAAGCCCACGCATCAAACAGGCGCAGCGCCTGCTGCGCCTCTACCACCTGTACCGCCTGAGTAT
CGGCATCACCCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGTCTGCTGGAGTACGCCAACGACGACCTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTCTTGAATATCCTGCTGGTGGTGTTCCTGGAAAACACCCGCCGCCCTGCCCGGCTGTTC
GGCCTGGCCCTGACCGACGTGCTGCTGCTCTCGTGGCTGTTCTTCGCCGCGGGCGGTGCCCCCAGCGCCATCGGTAACCT
GATCATCGTCTCGGTGGCCATCGGCAATACGCTGCTGCGCGGAAGGATCGGCCTGTTGATCGCGGCCGTCGCCACCCTTG
GCATCGTCGGTTCGAGTTTATTTCTTGGCTTGAGCGACTCGAACCGTCCCAGCAGTTACTTGCAAGCCGGCACCCTCGGG
GCGTTGTGTTTTGCCGCCGCGCTGCTGGTGCAGGGCCTGATCCGACGTTTGGAAGCCAGCGAAACCCTGGCCGAGCAGCG
GGCCAGCGAAGTAGTCGGACTGGAAGCCCTCAATGCCCTGATCCTGCAACGCATGCGCACCGGCATCCTGGTGCTCGACC
GCCAGCGCCGGGTCCAACTGGCCAACGAAAGCGCGCTGAACCTGCTGGGCATGCACGATCTGGTCGGCCAGCCGATCGAC
GATTGTTCCAGCGCCCTGGTCGAGCGCCTGCAACTCTGGCTGAACAACCCCAGCCTGCGCCCGCCCAGCCTGACCATCAG
CGGCACGGGCCTGACCCTGCAACCGAGCTTCATCGCCCTGGGCCACAACGACCAGCAGCAGATCCTGGTGTTTCTCGAAG
ACCTGGCCCAGGTGGCCCAGCACGCCCAACAGCTCAAGCTCGCCTCCCTGGGGCGCCTGACCGCCGGTATCGCCCATGAA
ATCCGCAACCCCTTGGGCGCCATCAGCCACGCGGCGCAATTGCTGCGCGAATCCGAGGAACTGAACGACGCGGATCGGCG
TCTGACGCAGATTATTCAAGATCACTCCCAACGAATGAATCGCGTCATTGAAAACGTCCTGCAGCTGTCTCGCCGCCAGC
AAACCACACCCCAGCGCCTCGACCTGCGGACCTGGCTCGATCAGTTCGTCCGGCAGACCCGCGAAAGCATGGCCGACCAC
CAACGATTGCACTTGAGCATCGACCCGGGCGACTACACCACGCTCATGGACCCCGACCAGCTCACCCAGGTGCTCGACAA
CCTGCTGCGCAACGCCTGGCGCCACAGCGCCATGGCCCATGAACAGGCCGAGGCCTGGCTGAAACTGTTCATCGACCCTC
ACAGCCAGCTGTCGACCCTGGACATCATCGACAACGGCCCCGGTGTCACGCCCGAGCAACAGGCACATCTGTTCGAACCC
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACTTTTGCTCACGGACGGAAACAGATTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.47

99.811

0.594

Multiple sequence alignment