Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACK1LH_RS19140 Genome accession   NZ_CP176757
Coordinates   3740858..3741970 (-) Length   370 a.a.
NCBI ID   WP_411333955.1    Uniprot ID   -
Organism   Metabacillus indicus strain JKLC.Or24     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3735858..3746970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK1LH_RS19105 (ACK1LH_19105) flgL 3736089..3736970 (-) 882 WP_411333949.1 flagellar hook-associated protein FlgL -
  ACK1LH_RS19110 (ACK1LH_19110) flgK 3736981..3738501 (-) 1521 WP_411333950.1 flagellar hook-associated protein FlgK -
  ACK1LH_RS19115 (ACK1LH_19115) - 3738520..3739002 (-) 483 WP_411333951.1 flagellar protein FlgN -
  ACK1LH_RS19120 (ACK1LH_19120) flgM 3739020..3739277 (-) 258 WP_411333952.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACK1LH_RS19125 (ACK1LH_19125) - 3739343..3739759 (-) 417 WP_411335127.1 TIGR03826 family flagellar region protein -
  ACK1LH_RS19130 (ACK1LH_19130) - 3739816..3740505 (-) 690 WP_411333954.1 ComF family protein -
  ACK1LH_RS19135 (ACK1LH_19135) - 3740502..3740777 (-) 276 WP_029284747.1 late competence development ComFB family protein -
  ACK1LH_RS19140 (ACK1LH_19140) comFA 3740858..3741970 (-) 1113 WP_411333955.1 DEAD/DEAH box helicase Machinery gene
  ACK1LH_RS19145 (ACK1LH_19145) - 3742309..3742494 (-) 186 WP_411333956.1 hypothetical protein -
  ACK1LH_RS19150 (ACK1LH_19150) - 3742585..3742830 (+) 246 WP_411333957.1 hypothetical protein -
  ACK1LH_RS19155 (ACK1LH_19155) - 3742853..3743695 (-) 843 WP_411333958.1 DegV family protein -
  ACK1LH_RS19160 (ACK1LH_19160) - 3743879..3744562 (-) 684 WP_029284755.1 response regulator -
  ACK1LH_RS19165 (ACK1LH_19165) - 3744635..3745792 (-) 1158 WP_029284757.1 sensor histidine kinase -
  ACK1LH_RS19170 (ACK1LH_19170) - 3746069..3746704 (+) 636 WP_203289059.1 YigZ family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40999.39 Da        Isoelectric Point: 9.3473

>NTDB_id=1082803 ACK1LH_RS19140 WP_411333955.1 3740858..3741970(-) (comFA) [Metabacillus indicus strain JKLC.Or24]
MGRVSECTPLIKWTGPCRQKSEAASAGLEWDGRLSNAQQKGSDQMVYAVRNQQDLLLWAVCGAGKTEMLFHGIEEALSEN
KQVCLAAPRTDVILELTPRLRTVFPKVKIASLYGGSEERFQEADLVIATTHQLMRFTAAFDVLIIDEVDAFPFSADEKLQ
FAAARARKPDSSLIYLTATPSEKIKEAISLHVKIPQRFHGHPLPVPSFTWCGHYKRALQKKRLPEPLQQWVTDRLSSNKQ
AFLFVPSISILKDVVAILKKQHAAVEGVHAEDPDRKEKVQKFRDGAIPIIITTTILERGVTIPNSDAAVLGAEAGVFTES
ALVQIAGRVGRSAAHPDGDVRFFHYGKTEAMIRAKKHIQMMNSLVAKVTL

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=1082803 ACK1LH_RS19140 WP_411333955.1 3740858..3741970(-) (comFA) [Metabacillus indicus strain JKLC.Or24]
ATGGGAAGAGTAAGCGAATGTACGCCTCTCATCAAGTGGACAGGCCCGTGCCGGCAAAAGAGCGAGGCTGCATCTGCAGG
CCTGGAGTGGGACGGCAGGCTTTCAAATGCCCAGCAAAAAGGATCAGACCAAATGGTTTATGCGGTAAGAAATCAGCAGG
ATTTGCTGCTCTGGGCAGTGTGTGGAGCGGGTAAAACCGAGATGCTTTTTCATGGAATAGAGGAAGCACTGTCGGAAAAT
AAACAAGTGTGTCTTGCAGCCCCGAGAACTGATGTCATCCTCGAGCTCACGCCAAGGCTCCGGACAGTATTCCCGAAAGT
GAAGATTGCCTCTCTCTACGGAGGAAGTGAAGAACGCTTCCAGGAAGCGGATCTCGTCATTGCAACGACTCATCAGCTCA
TGCGCTTCACCGCTGCATTTGATGTCCTAATCATTGACGAAGTGGATGCCTTTCCATTTTCAGCAGACGAAAAACTCCAG
TTTGCTGCAGCCAGAGCCCGAAAGCCTGACAGTTCTCTGATATACTTAACCGCCACCCCTTCAGAAAAAATTAAAGAAGC
TATCAGTCTTCATGTGAAAATTCCGCAAAGATTCCACGGCCATCCACTTCCTGTTCCTTCCTTCACCTGGTGCGGGCATT
ACAAACGGGCGCTTCAGAAAAAGAGACTCCCTGAACCGCTTCAGCAATGGGTCACTGACCGTCTAAGCTCAAACAAACAG
GCATTTCTATTTGTCCCTTCAATCTCAATTTTAAAAGACGTTGTGGCAATCCTGAAAAAGCAGCATGCAGCGGTCGAAGG
GGTCCATGCAGAAGATCCGGACCGGAAAGAAAAGGTGCAGAAATTCAGAGACGGCGCCATTCCGATTATTATTACAACGA
CCATATTGGAGAGGGGAGTCACCATTCCTAATTCGGATGCGGCGGTGCTCGGGGCAGAAGCGGGTGTTTTTACTGAAAGT
GCCCTTGTCCAGATTGCAGGACGTGTCGGCAGAAGCGCTGCACACCCTGATGGGGATGTCCGTTTTTTTCACTACGGAAA
AACAGAAGCGATGATTCGTGCCAAAAAGCATATTCAAATGATGAACTCGCTGGTTGCGAAAGTGACTTTATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(36-181)

Helicase conserved C-terminal domain (Helicase_C)

(235-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.957

100

0.532
  comFA Latilactobacillus sakei subsp. sakei 23K

44.152

92.432

0.408
  comFA Lactococcus lactis subsp. cremoris KW2

42.151

92.973

0.392
  comFA/cflA Streptococcus pneumoniae D39

41.642

92.162

0.384
  comFA/cflA Streptococcus pneumoniae Rx1

41.642

92.162

0.384
  comFA/cflA Streptococcus pneumoniae R6

41.642

92.162

0.384
  comFA/cflA Streptococcus mitis SK321

40.571

94.595

0.384
  comFA/cflA Streptococcus pneumoniae TIGR4

41.349

92.162

0.381
  comFA/cflA Streptococcus mitis NCTC 12261

39.883

92.162

0.368

Multiple sequence alignment