Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACK2VH_RS05335 Genome accession   NZ_CP176684
Coordinates   1171968..1173305 (-) Length   445 a.a.
NCBI ID   WP_003110427.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain GTVSS-024     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1166968..1178305
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2VH_RS05305 (ACK2VH_05305) pilX 1167620..1168207 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  ACK2VH_RS05310 (ACK2VH_05310) pilW 1168204..1169027 (-) 824 Protein_1040 type 4a pilus minor pilin PilW -
  ACK2VH_RS05315 (ACK2VH_05315) pilV 1169024..1169581 (-) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  ACK2VH_RS05320 (ACK2VH_05320) - 1169572..1170078 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  ACK2VH_RS05325 (ACK2VH_05325) - 1170184..1170693 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  ACK2VH_RS05330 (ACK2VH_05330) thiO 1170828..1171922 (+) 1095 WP_003145981.1 glycine oxidase ThiO -
  ACK2VH_RS05335 (ACK2VH_05335) pilR 1171968..1173305 (-) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  ACK2VH_RS05340 (ACK2VH_05340) pilS 1173320..1174912 (-) 1593 WP_003094692.1 two-component system sensor histidine kinase PilS Regulator
  ACK2VH_RS05345 (ACK2VH_05345) - 1174902..1175147 (-) 246 WP_003102591.1 PP0621 family protein -
  ACK2VH_RS05350 (ACK2VH_05350) - 1175304..1176329 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  ACK2VH_RS05355 (ACK2VH_05355) rluD 1176475..1177437 (+) 963 WP_003094686.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ACK2VH_RS05360 (ACK2VH_05360) pgeF 1177434..1178162 (+) 729 WP_003102588.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49723.03 Da        Isoelectric Point: 5.8638

>NTDB_id=1082306 ACK2VH_RS05335 WP_003110427.1 1171968..1173305(-) (pilR) [Pseudomonas aeruginosa strain GTVSS-024]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLADRI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=1082306 ACK2VH_RS05335 WP_003110427.1 1171968..1173305(-) (pilR) [Pseudomonas aeruginosa strain GTVSS-024]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGATCGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTATACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCGGCGAGCCTGAGCGAAATCGACAACCTCGAGGAC
TACCTGGAAGATATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Response regulator receiver domain (Response_reg)

(7-115)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

99.775

100

0.998
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384

Multiple sequence alignment