Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACK2JI_RS14745 Genome accession   NZ_CP176643
Coordinates   2949944..2950405 (-) Length   153 a.a.
NCBI ID   WP_008729107.1    Uniprot ID   -
Organism   [Clostridium] innocuum strain SFAD8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2943160..2958795 2949944..2950405 within 0


Gene organization within MGE regions


Location: 2943160..2958795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2JI_RS14680 - 2943160..2944026 (-) 867 WP_002611219.1 DNA/RNA non-specific endonuclease -
  ACK2JI_RS14685 - 2944127..2944426 (-) 300 WP_002611221.1 hypothetical protein -
  ACK2JI_RS14690 - 2944416..2945402 (-) 987 WP_002611223.1 hypothetical protein -
  ACK2JI_RS14695 - 2945466..2945627 (-) 162 WP_002611225.1 hypothetical protein -
  ACK2JI_RS14700 - 2945777..2946403 (-) 627 WP_002611226.1 hypothetical protein -
  ACK2JI_RS14705 - 2946588..2946725 (-) 138 WP_002611501.1 hypothetical protein -
  ACK2JI_RS14710 - 2946803..2947105 (-) 303 WP_233109008.1 hypothetical protein -
  ACK2JI_RS14715 - 2947153..2947644 (-) 492 WP_002611230.1 hypothetical protein -
  ACK2JI_RS14720 - 2947641..2947895 (-) 255 WP_002611232.1 hypothetical protein -
  ACK2JI_RS14725 - 2947899..2948120 (-) 222 WP_038274694.1 hypothetical protein -
  ACK2JI_RS14730 - 2948211..2948582 (-) 372 WP_002611238.1 hypothetical protein -
  ACK2JI_RS14735 - 2948669..2949343 (-) 675 WP_008729102.1 hypothetical protein -
  ACK2JI_RS14740 - 2949390..2949926 (-) 537 WP_038274772.1 NUMOD4 domain-containing protein -
  ACK2JI_RS14745 ssb 2949944..2950405 (-) 462 WP_008729107.1 single-stranded DNA-binding protein Machinery gene
  ACK2JI_RS14750 - 2950760..2951245 (-) 486 WP_117445023.1 class I SAM-dependent methyltransferase -
  ACK2JI_RS14755 - 2951220..2951492 (-) 273 WP_002611900.1 hypothetical protein -
  ACK2JI_RS14760 - 2951498..2952352 (-) 855 WP_109771457.1 hypothetical protein -
  ACK2JI_RS14765 - 2952692..2953042 (-) 351 WP_002611897.1 hypothetical protein -
  ACK2JI_RS14770 - 2953062..2954198 (-) 1137 WP_002611896.1 hypothetical protein -
  ACK2JI_RS14775 - 2954903..2955514 (-) 612 WP_002611894.1 hypothetical protein -
  ACK2JI_RS14780 - 2955536..2956621 (-) 1086 WP_002611893.1 lysozyme family protein -
  ACK2JI_RS14785 - 2956618..2956896 (-) 279 WP_002611892.1 helix-turn-helix domain-containing protein -
  ACK2JI_RS14790 - 2956936..2957634 (-) 699 WP_002611891.1 ParB/RepB/Spo0J family partition protein -
  ACK2JI_RS14795 - 2957627..2958469 (-) 843 WP_242406890.1 ParA family protein -
  ACK2JI_RS14800 - 2958535..2958795 (-) 261 WP_002611889.1 cold-shock protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 16846.78 Da        Isoelectric Point: 5.7628

>NTDB_id=1081860 ACK2JI_RS14745 WP_008729107.1 2949944..2950405(-) (ssb) [[Clostridium] innocuum strain SFAD8]
MINRVVLVGRLTKDPVLRKTTNGASVVSFTVACNRLFKQEGQPEADFINTVVWNKTADSVEKYTHKGSLVGVEGRIQTRS
YDDKDCKRVYVTEVVADNVRFLDSRKAGGTDHAYVPGQESTQSITTMSNSTPSFSSEFTSTAALDISDDDLPF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=1081860 ACK2JI_RS14745 WP_008729107.1 2949944..2950405(-) (ssb) [[Clostridium] innocuum strain SFAD8]
ATGATCAATAGAGTTGTATTAGTGGGAAGATTGACGAAGGACCCTGTATTACGGAAGACGACGAATGGCGCATCGGTCGT
GTCTTTTACGGTCGCATGCAACCGGCTTTTCAAACAGGAGGGACAGCCGGAAGCTGACTTCATCAACACTGTCGTCTGGA
ACAAGACCGCAGACAGTGTAGAGAAGTATACGCACAAGGGCTCTCTGGTAGGTGTAGAGGGCCGTATCCAGACGCGCAGC
TATGATGACAAGGATTGCAAGCGTGTATATGTAACAGAGGTGGTCGCGGATAATGTGCGCTTTCTGGACAGCCGGAAAGC
AGGAGGTACGGATCATGCTTACGTACCCGGACAGGAAAGCACACAGAGCATCACCACTATGAGCAACAGCACTCCGTCCT
TCTCCAGTGAGTTCACAAGCACTGCAGCATTGGATATCTCCGATGACGATCTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

47.059

100

0.523
  ssbA Bacillus subtilis subsp. subtilis str. 168

42.857

100

0.49
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

69.281

0.399

Multiple sequence alignment