Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACK2IZ_RS12735 Genome accession   NZ_CP176642
Coordinates   2631496..2631978 (+) Length   160 a.a.
NCBI ID   WP_411354265.1    Uniprot ID   -
Organism   Thomasclavelia ramosa strain SFAD15     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2626496..2636978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACK2IZ_RS12670 - 2627350..2627637 (+) 288 WP_117582257.1 hypothetical protein -
  ACK2IZ_RS12675 - 2627637..2627918 (+) 282 WP_117582255.1 hypothetical protein -
  ACK2IZ_RS12680 - 2627981..2628145 (+) 165 WP_369931560.1 YopX family protein -
  ACK2IZ_RS12685 - 2628139..2628594 (+) 456 WP_288910924.1 hypothetical protein -
  ACK2IZ_RS12690 - 2628578..2628841 (+) 264 WP_117582251.1 hypothetical protein -
  ACK2IZ_RS12695 - 2628838..2629032 (+) 195 WP_117582249.1 hypothetical protein -
  ACK2IZ_RS12700 - 2629054..2629344 (+) 291 WP_117582247.1 DUF6618 family protein -
  ACK2IZ_RS12705 - 2629346..2629729 (+) 384 WP_117582245.1 hypothetical protein -
  ACK2IZ_RS12710 - 2629770..2629997 (+) 228 WP_117582243.1 hypothetical protein -
  ACK2IZ_RS12715 - 2630012..2630359 (+) 348 WP_117582241.1 hypothetical protein -
  ACK2IZ_RS12720 - 2630379..2630942 (+) 564 WP_411354264.1 hypothetical protein -
  ACK2IZ_RS12725 - 2631001..2631204 (+) 204 WP_288910861.1 hypothetical protein -
  ACK2IZ_RS12730 - 2631220..2631381 (+) 162 WP_288910863.1 hypothetical protein -
  ACK2IZ_RS12735 ssbA 2631496..2631978 (+) 483 WP_411354265.1 single-stranded DNA-binding protein Machinery gene
  ACK2IZ_RS12740 - 2632283..2632867 (+) 585 WP_117582812.1 hypothetical protein -
  ACK2IZ_RS12745 - 2633257..2633673 (+) 417 WP_227154647.1 hypothetical protein -
  ACK2IZ_RS12750 - 2634234..2634698 (+) 465 WP_117580718.1 plasmid mobilization protein -
  ACK2IZ_RS12755 - 2634698..2636281 (+) 1584 WP_117580721.1 relaxase/mobilization nuclease domain-containing protein -
  ACK2IZ_RS12760 - 2636281..2636826 (+) 546 WP_117580722.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18561.66 Da        Isoelectric Point: 4.8103

>NTDB_id=1081850 ACK2IZ_RS12735 WP_411354265.1 2631496..2631978(+) (ssbA) [Thomasclavelia ramosa strain SFAD15]
MINRVVLTGRMTRDPELRRTPQGDAVTSFTLAVNRNFTSRDGQQQADFINCVVWRKPAENVERYCSKGSLVGVEGRIQTR
SYDNTQGQKVYVVEVICDSVQFLETRAVRERQTQPQQQMQQPYQQPQNNDNFYDMKTVELEKEFDNSANSFDILPDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=1081850 ACK2IZ_RS12735 WP_411354265.1 2631496..2631978(+) (ssbA) [Thomasclavelia ramosa strain SFAD15]
ATGATTAACAGGGTAGTTTTAACAGGACGAATGACTAGAGATCCTGAACTTAGAAGAACACCACAAGGTGATGCGGTTAC
TTCTTTTACTTTAGCGGTAAACCGTAATTTTACAAGCAGAGATGGTCAACAACAAGCAGATTTTATTAATTGTGTCGTGT
GGCGTAAACCTGCTGAAAATGTTGAGAGATATTGTTCTAAGGGAAGTTTAGTTGGTGTTGAAGGAAGAATCCAAACACGT
AGCTATGACAATACTCAAGGTCAAAAGGTATATGTTGTAGAAGTTATTTGTGATAGTGTGCAATTCTTAGAAACAAGAGC
TGTTCGTGAAAGGCAAACACAGCCACAACAACAAATGCAACAACCGTACCAACAACCACAAAATAATGATAATTTCTATG
ATATGAAAACAGTTGAATTAGAAAAAGAATTTGATAATTCAGCAAACTCTTTTGATATTCTTCCTGATGATTTACCGTTT
TAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.821

100

0.506
  ssb Latilactobacillus sakei subsp. sakei 23K

46.784

100

0.5
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

65

0.375

Multiple sequence alignment