Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   AACH55_RS01625 Genome accession   NZ_AP029028
Coordinates   364578..365441 (-) Length   287 a.a.
NCBI ID   WP_338720135.1    Uniprot ID   -
Organism   Herbaspirillum sp. DW155     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359578..370441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH55_RS01595 (HBDW_03140) argJ 360172..361407 (+) 1236 WP_338717656.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  AACH55_RS01600 (HBDW_03150) - 361418..362293 (+) 876 WP_338717657.1 ATP-binding protein -
  AACH55_RS01605 (HBDW_03160) - 362293..362718 (+) 426 WP_338717658.1 NUDIX domain-containing protein -
  AACH55_RS01610 (HBDW_03170) yacG 362761..362946 (-) 186 WP_034336666.1 DNA gyrase inhibitor YacG -
  AACH55_RS01615 (HBDW_03180) zapD 362983..363738 (-) 756 WP_338717661.1 cell division protein ZapD -
  AACH55_RS01620 (HBDW_03190) coaE 363954..364574 (-) 621 WP_338717663.1 dephospho-CoA kinase -
  AACH55_RS01625 (HBDW_03200) pilD 364578..365441 (-) 864 WP_338720135.1 A24 family peptidase Machinery gene
  AACH55_RS01630 (HBDW_03210) - 365503..366759 (-) 1257 WP_338717664.1 type II secretion system F family protein -
  AACH55_RS01635 (HBDW_03220) pilF 366746..367882 (-) 1137 WP_338717665.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  AACH55_RS01640 (HBDW_03230) - 368035..369327 (-) 1293 WP_338717666.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30705.92 Da        Isoelectric Point: 8.2668

>NTDB_id=108184 AACH55_RS01625 WP_338720135.1 364578..365441(-) (pilD) [Herbaspirillum sp. DW155]
MPFLDALALPGDPALAAVAALLGLLVGSFLNVVIHRLPLMMLRETANFVAQERGEALPHSARYNLWLPASVCPHCARPLA
LRHKVPVLSWLLLRGRCGFCQGSISARYPLVELLTALLFALLGWRFGLGTHALALMTCAAFLIALAVIDAETMLLPDDLT
LPLLWLGLLVNLAHGGVPLQDAVLGAMAGYGALWLVFWIFKLATGKEGLGYGDFKLMAALGAWLGWQALPLVLLLASALG
AVLGAALMGLGRHQRGQAIPFGPCLAAAGMLTLLMGHHWLTRLLYDF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=108184 AACH55_RS01625 WP_338720135.1 364578..365441(-) (pilD) [Herbaspirillum sp. DW155]
ATGCCCTTCCTGGATGCCCTGGCCCTCCCCGGCGACCCGGCCCTGGCCGCTGTGGCGGCACTGCTGGGCCTGCTGGTGGG
AAGCTTCCTGAACGTGGTGATCCACCGCCTGCCGCTGATGATGCTGCGCGAGACCGCCAACTTCGTTGCCCAGGAACGCG
GCGAAGCCTTGCCGCACAGCGCCCGCTACAACCTCTGGCTGCCCGCCTCGGTCTGCCCGCATTGCGCCCGGCCCCTGGCC
CTGCGCCACAAGGTGCCGGTGCTGAGCTGGCTGCTGCTGCGCGGACGCTGCGGCTTCTGCCAGGGCAGCATCAGCGCGCG
CTATCCGCTGGTGGAACTGCTGACGGCGCTGCTCTTTGCGCTGCTGGGCTGGCGCTTCGGGTTGGGCACACACGCTCTGG
CACTGATGACTTGCGCCGCCTTCCTGATCGCGCTGGCCGTCATCGATGCCGAAACCATGCTGCTGCCCGATGACCTCACC
CTGCCATTGCTGTGGCTGGGCCTGCTGGTCAATCTCGCGCATGGCGGGGTGCCGCTGCAGGATGCAGTATTGGGCGCGAT
GGCCGGCTATGGTGCGCTGTGGCTGGTGTTCTGGATCTTCAAGCTGGCCACCGGCAAGGAGGGACTCGGCTATGGCGACT
TCAAGCTGATGGCCGCGCTGGGTGCCTGGCTGGGCTGGCAAGCCTTGCCGCTGGTGCTGCTGCTGGCCTCGGCCCTGGGC
GCCGTGCTGGGGGCAGCCCTGATGGGCCTGGGGCGCCACCAGCGCGGCCAGGCCATTCCTTTCGGGCCTTGCCTGGCGGC
GGCCGGCATGCTGACTTTGCTGATGGGCCATCACTGGCTGACACGGCTTCTTTACGATTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.434

93.031

0.488
  pilD Vibrio campbellii strain DS40M4

49.442

93.728

0.463
  pilD Neisseria gonorrhoeae MS11

49.615

90.592

0.449
  pilD Acinetobacter baumannii D1279779

44.403

93.38

0.415
  pilD Acinetobacter nosocomialis M2

43.657

93.38

0.408

Multiple sequence alignment