Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   AACH41_RS01420 Genome accession   NZ_AP029023
Coordinates   314100..315590 (-) Length   496 a.a.
NCBI ID   WP_338656259.1    Uniprot ID   -
Organism   Methylophilus sp. DW102     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 309100..320590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AACH41_RS01395 (MTDW_02680) - 309409..310635 (+) 1227 WP_338656251.1 dicarboxylate/amino acid:cation symporter -
  AACH41_RS01400 (MTDW_02690) - 310640..311176 (+) 537 WP_338656253.1 GNAT family N-acetyltransferase -
  AACH41_RS01405 (MTDW_02700) - 311446..312363 (+) 918 WP_338656254.1 DMT family transporter -
  AACH41_RS01410 (MTDW_02710) ampD 312360..312917 (-) 558 WP_338656256.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AACH41_RS01415 (MTDW_02720) - 313044..314054 (+) 1011 WP_313986309.1 sodium:calcium antiporter -
  AACH41_RS01420 (MTDW_02730) pilR 314100..315590 (-) 1491 WP_338656259.1 sigma-54 dependent transcriptional regulator Regulator
  AACH41_RS01425 (MTDW_02740) - 315591..317183 (-) 1593 WP_275356484.1 ATP-binding protein -
  AACH41_RS01430 (MTDW_02750) - 317502..318077 (+) 576 WP_275356485.1 RNA polymerase sigma factor -
  AACH41_RS01435 (MTDW_02760) - 318081..318452 (+) 372 WP_338656262.1 DUF3619 family protein -
  AACH41_RS01440 (MTDW_02770) - 318631..319026 (+) 396 WP_338657567.1 DUF3106 domain-containing protein -
  AACH41_RS01445 (MTDW_02780) pbpG 319084..320166 (-) 1083 WP_194749810.1 D-alanyl-D-alanine endopeptidase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54218.16 Da        Isoelectric Point: 4.6939

>NTDB_id=108157 AACH41_RS01420 WP_338656259.1 314100..315590(-) (pilR) [Methylophilus sp. DW102]
MANTYRCLVVDDETDIRELVVLTLERMGIQAESASTVTDAKHMLQSFSYDLCLTDMRLPDGLGLELVQHINAQFPGLPVA
VITAYGSAENAVSALKAGAYDYITKPISLKQLRPLVESALKLSSQKESQGANTVDLIGASPAMGYVRTMIAKLARSQAPV
YISGESGSGKELAARLIHQNSARKDQSFVAVNCGAIPENLMESEFFGYKKGAFTGAVQDTQGLFQAASGGTLFLDEVADL
PLAMQVKLLRAIQEKKVRVVGSTIEEAVDVRIISATHKNLNAMMEKGEFRQDLYYRLNVIQLKMPALRERPEDIPELTER
LLTKLCQTQGIDIPVIADDAKVFIQQLPFHGNVRELENMLERALALCDGQTITVEDLSLEDMPAQLSDRPVLPWKAPVLE
RANEPVAKAAEVVPPASAAPATAPGTMLPMDVSLSDYLEDIEKRTILQALEKTNNNKTAAAKLLGISFRTLRYRLSKLGL
SKEQDADLEDADGDEE

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=108157 AACH41_RS01420 WP_338656259.1 314100..315590(-) (pilR) [Methylophilus sp. DW102]
ATGGCAAACACTTATCGTTGTCTGGTAGTTGATGACGAAACCGATATTCGCGAACTGGTCGTCCTGACACTGGAACGTAT
GGGCATACAGGCCGAGAGCGCCAGTACCGTCACAGATGCAAAACATATGCTGCAGTCTTTCAGCTATGACTTGTGCCTAA
CCGATATGCGCCTGCCGGATGGCTTGGGCCTGGAACTGGTACAGCACATCAATGCACAATTTCCGGGGCTGCCCGTCGCG
GTAATTACGGCTTATGGCAGTGCAGAAAATGCGGTTTCTGCGCTCAAGGCCGGGGCCTACGACTACATCACCAAACCGAT
TTCACTCAAACAGTTGCGGCCATTGGTCGAGTCTGCGCTCAAGCTTTCCTCGCAAAAAGAATCTCAAGGAGCCAACACCG
TCGATTTGATTGGGGCGTCTCCGGCCATGGGCTATGTCAGGACCATGATTGCCAAGCTGGCACGTAGCCAGGCCCCTGTT
TACATCAGCGGGGAGTCTGGCAGTGGTAAGGAGCTGGCCGCACGCCTCATCCACCAGAACAGCGCCCGCAAGGACCAGTC
TTTTGTCGCAGTTAACTGTGGCGCCATCCCCGAGAACCTGATGGAAAGCGAATTCTTTGGCTATAAAAAAGGGGCTTTTA
CCGGCGCCGTTCAGGATACGCAAGGCCTGTTTCAAGCCGCCAGTGGGGGCACCTTGTTTCTGGATGAAGTAGCCGACTTG
CCACTGGCCATGCAAGTCAAACTGCTGCGCGCGATTCAGGAGAAAAAAGTCCGCGTGGTGGGGAGCACCATTGAAGAGGC
CGTAGATGTACGCATCATTTCTGCCACGCACAAAAACCTTAATGCCATGATGGAAAAAGGCGAATTCCGGCAGGATTTGT
ATTACCGGCTCAATGTGATTCAGCTCAAAATGCCGGCCTTGCGTGAGCGCCCCGAAGACATTCCGGAGCTGACAGAACGT
TTGCTGACCAAGTTGTGCCAGACACAAGGCATAGACATCCCGGTGATTGCCGATGATGCCAAAGTGTTTATTCAGCAACT
GCCCTTTCATGGCAATGTCCGTGAACTCGAAAACATGCTGGAACGCGCACTGGCGCTATGCGATGGCCAGACCATTACGG
TAGAGGACTTGTCGCTGGAGGACATGCCTGCGCAACTGAGTGATCGCCCGGTGTTGCCCTGGAAGGCCCCTGTATTGGAG
CGCGCCAACGAACCCGTGGCGAAAGCGGCTGAGGTGGTCCCGCCAGCCAGCGCCGCACCCGCGACGGCCCCCGGGACCAT
GTTACCGATGGATGTGAGCTTGTCTGATTATCTGGAAGACATTGAAAAGCGCACGATTCTGCAAGCCCTGGAGAAAACCA
ACAACAATAAAACTGCGGCGGCCAAATTACTGGGCATCAGTTTCCGCACTTTGCGCTACCGTTTATCCAAGCTAGGATTA
TCGAAAGAGCAAGACGCGGACCTGGAGGACGCAGACGGCGACGAAGAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-114)

Bacterial regulatory protein, Fis family (HTH_8)

(438-478)

Sigma-54 interaction domain (Sigma54_activat)

(136-302)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

55.158

95.766

0.528
  pilR Acinetobacter baumannii strain A118

45.979

97.782

0.45

Multiple sequence alignment